Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03380 320 / 6e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 167 / 8e-45 MEF22 mitochondrial editing factor 22 (.1) AT5G40405 164 / 5e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 165 / 6e-44 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 164 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G15510 164 / 3e-43 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G61170 159 / 7e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 154 / 8e-40 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09190 149 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37310 150 / 6e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161800 [exp] 510 / 6e-175 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 190 / 2e-52 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 181 / 3e-49 AT3G22690 582 / 0.0 unknown protein Potri.007G104700 [exp] 179 / 4e-49 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 173 / 1e-46 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 169 / 7e-45 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 168 / 7e-45 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 167 / 1e-44 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.009G044700 [exp] 167 / 1e-44 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030418 [exp] 248 / 5e-74 AT2G03380 666 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026641 [exp] 183 / 7e-53 AT2G03380 354 / 1e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 190 / 8e-53 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 176 / 6e-48 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 176 / 2e-47 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029853 [exp] 167 / 5e-46 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027389 [exp] 159 / 6e-43 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040634 [exp] 160 / 9e-43 AT4G14050 705 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031028 [exp] 160 / 3e-42 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 160 / 1e-41 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.008G092900.2 pacid=42805857 polypeptide=Potri.008G092900.2.p locus=Potri.008G092900 ID=Potri.008G092900.2.v4.1 annot-version=v4.1 ATGGTGAAACTAATCTCTCTTTTCCACAAACAAGCACATGCCTCTGCCCCCAATACCCTACAACTTCTTCCAAACCCATCCTTTCGCCTTCTGGGTCTCC GCGAAAACATCGATACTCTCATGGAAATGCACGCTTGCCTCATTGTTCAGGGCCTCACTCGGGATCTTTCTCGCAGCACCAAATTAATTAACTCTTATGG TTCTTTTGGCCGTGTTGATTTTTCACGCTTATTGTTCGACTCAATACCCGACCCGGTACACTATCAAATTGTCAAGTTAGGGAATCCTGATAGTCTTGTG TCGACTGGTCTTGTTGACATGTATGCCAAGTGTGGAGACATTGACTGTTCTTGTGCCGTGTTCGATGGAAATCTTGATAGAAATGGGTTACTTGGAGCTT CATGGTTGCTGGCTATGTACGGAACAATTGAGTTGATTGAAGCAAATCCAATTGCACTATGGAGCTTAGTTACTGCATGTAAAAAGTTAGGAGCTTTGCA TCAAGGGAAGTGGCTTCATGGATACTTGATTAAATGTGTTTTTGAACTTGGTTCTTACTTGGTGACAACCCTTCTAGACGTGTATGCAAAGTGTGGAATC ATTAGAGATGCGAGGTCTGTATTTGATGAGCTGTGTGATATTGATCTCATCTCGTGGACAGCTATGATCTTCGGGCGCACCCAGAAAGGCTGTTCCGAGG AGGCTTTGAAGTTGTTCATGCATAAGGAATGCGCCGGTGTCTTGCCTAATGACGTTACCGTTGCAAGTGTGTTTCAGCATGAATTGGTTGTCTGGAATTC CATTATTTCCGGGCTTTATCAGAATGGTTCTGCATACAAAGCCCTTGAACTGTTTCGCCAAATGAGGACGGGATCTGTCTTACCTGATGCAGTCACGCTA GTTAGTGTCTTGTCAGCTTGTGCTTCCCTTAGTGCTCTCCAAGTCGGTTCTTCTTTTCATGCTTACACAGTAAAGAGGGGTCTATTATCCTCTCATGTTT ATGCTGGCACTGCACTTTTGACCTTTTATGCCAACTGTGGGAATGTTGAATCTGCTCGTATTATTTTTGACGATATGGGCAAGAAAAGCACTGTCACATG GAGTGCAATGATTTGTGACTACGAAATTCAGGGGGATGGTCGTGGATCCCTTTCAATTTTCGCTCGTGCTGGCAGGCCTGAGGAAGCCCTGGGCTTCATT CAGAAAATGCCAGTTCAACCAGATGCTAGTTTGTTTGGAGCATTTCCTCATGGATGTGGACTACATTCAAGGTTTGATCTTGGAGAGGTAGCAATCAAGA GGATGCTAGAGCTCCAAACTGGTGAAGCTTGTTACATTGTGCTAATGTGCAATCTGTATGCTTCGGATGGAAGATGGAATCAGGTTAAGCAGGTACGGGA GTTGATGAAACAGAGAGGATTGATGAAAACTTCTGATTGTAGCCTGATGGAGATGGATGGTGACCACTTCTCCTTTTCTACAGCTGCTTCCCTTGCATAG
AA sequence Show only first row Show all	>Potri.008G092900.2 pacid=42805857 polypeptide=Potri.008G092900.2.p locus=Potri.008G092900 ID=Potri.008G092900.2.v4.1 annot-version=v4.1 MVKLISLFHKQAHASAPNTLQLLPNPSFRLLGLRENIDTLMEMHACLIVQGLTRDLSRSTKLINSYGSFGRVDFSRLLFDSIPDPVHYQIVKLGNPDSLV STGLVDMYAKCGDIDCSCAVFDGNLDRNGLLGASWLLAMYGTIELIEANPIALWSLVTACKKLGALHQGKWLHGYLIKCVFELGSYLVTTLLDVYAKCGI IRDARSVFDELCDIDLISWTAMIFGRTQKGCSEEALKLFMHKECAGVLPNDVTVASVFQHELVVWNSIISGLYQNGSAYKALELFRQMRTGSVLPDAVTL VSVLSACASLSALQVGSSFHAYTVKRGLLSSHVYAGTALLTFYANCGNVESARIIFDDMGKKSTVTWSAMICDYEIQGDGRGSLSIFARAGRPEEALGFI QKMPVQPDASLFGAFPHGCGLHSRFDLGEVAIKRMLELQTGEACYIVLMCNLYASDGRWNQVKQVRELMKQRGLMKTSDCSLMEMDGDHFSFSTAASLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.008G092900 [exp]	0	1
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Potri.006G199600 [exp]	1.41	0.9335
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	3.16	0.9239
					Potri.008G089401 [exp]	4.89	0.9226
AT5G04000			unknown protein		Potri.016G044001 [exp]	8.77	0.8971
AT1G33500			unknown protein		Potri.013G095400 [exp]	13.07	0.8784
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220150 [exp]	14.83	0.8887
					Potri.013G079400 [exp]	15.42	0.8804
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127200 [exp]	17.74	0.8808
AT3G20530			Protein kinase superfamily pro...		Potri.004G018400 [exp]	18.08	0.8205
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.001G055900 [exp]	19.20	0.8619

Compare expression of checked genes

Potri.008G092900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.