Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69350 832 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 431 / 3e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 414 / 1e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 408 / 1e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G04370 399 / 3e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39952 399 / 3e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 400 / 3e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 400 / 3e-127 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 392 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 380 / 1e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156800 [exp] 448 / 5e-146 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 450 / 2e-144 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G074000 [exp] 437 / 2e-142 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 428 / 8e-137 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 417 / 1e-134 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 420 / 3e-134 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 413 / 2e-131 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G258500 [exp] 408 / 1e-130 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 391 / 6e-124 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030415 [exp] 882 / 0 AT1G69350 814 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 438 / 7e-140 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 427 / 1e-137 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 422 / 1e-135 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 420 / 4e-134 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 413 / 3e-131 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036071 [exp] 407 / 2e-130 AT1G18485 464 / 5e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 407 / 1e-129 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 401 / 6e-128 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 404 / 8e-128 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G093000.1 pacid=42807243 polypeptide=Potri.008G093000.1.p locus=Potri.008G093000 ID=Potri.008G093000.1.v4.1 annot-version=v4.1 ATGACACGCTACATGCCCCTTTTCAGGTCCTGCAAAACCTTAAGACAATTAAACCAACTCCATGCCCACCTTTCAGTCACTAATCTCTCCAACACCGCCC AAGCCTCCACCAAACTCATCGAGTCCTATGCCCAAATGGGTTCCATTAAATCCTCAACACTTGTCTTTGAAACCTATCAAAACCCTGATTCTTTCATGTG GGGTGTCCTTATAAAATGCCATGTCTGGTCTCACGCTTTTGAAGAAGCCATTTTACTCTACGACAAGATGTTATGCAATGAAGCTCAAATTACTAGTTTC GTATTTCCTTCAGTTTTGAGAGCTTGTGCTGGTTTTGGGGACATGTTTATTGGTGCAAAAGTTCACGGGAGGATAATTAAATGTGGGTTTGATAACGATC CTTTTATTGAGACTTCACTTCTCGGTTTGTATGGAGAATTAGGTTGCTTAACTGATGCAAGGAAGGTGTTTGATGATATTCCGGTCAGAGATTTGGTTTC GTGGAGTTCGATTATTTCTAGTTATGTTGATAAGGGAGAGGCAAATGAAGCGTTGGAGATGTTTAGGTTGTTGGTAAATGAACGTGTTAAATTGGACTGG GTTATAATGTTAAGTGTCACTGAGGCTTGTTCTAAACTGGGCATTTTGAAGCTAGCTAAGTCCATACATGGTTATATCGTTAGGAGGAGAGTTGACACTT GTGAGGCGTTGGATAATTCCCTTATTGAGATGTATAGTTCATGTGATGATTTGTATAGTGCTGAGAGAATTTTTGTAAATATGGCCAATAAGACTTTTAT TTCATGGACTTCAATGATTTACTGTTATAATCGAAGCGGTTGGTTTAAAGAAGCTTTTGAGATTTTTGTGAAGATGCTAGAGTTGAAAGTGGAGCCGAAT GTGATTACCATAATGGGGGTTCTTAAATCTTGTTCTGGGTTAAGCTGGCTTAGAGAAGGGAAATTAATTCATTGTTATGCATTGAAGAAAGGTATGACAT TCCAAGATGACTGTCTAGGGCCAGTGTTAATTGAATTATATGCTGGATGTGGTAAACTAGGTTATTGTGAGAAGGTTCTTCTTGCAATTGGGGAGAGAAA TGTTGTGTCATGGAACACACTCTTATCGATAAATGCTAGGCAAGGGTTGTTCGAGGAAGCACTGGTATTATTTGTGCAGATGCAAAAACGAGGACTAATG CTGGATTTTTTTAGCCTGTCAAGTGCGATATCTGCTTGTGGAAATGTGGGTTCATTACAGCTTGGGCGTCAGATACATGGTTATGCCATCAAACGATGCA TTTTGGGCGAGTTTGTCAAGAATGCTCTAATTGGCATGTACTCGAGGTGTGGTTTCTCAGATTCAGCATACATGATATTTAATGATATTAAACAAAAAAG TAGTGTGGCTTGGAATTCTATTATTTCCGGGTTCGTTCAGAGTGGTAATTCGATAGAGGCAATTCATCTCGTTGATCAAATGTACCTCAATTGTCTTAAA ATAACTGATGTGGTCTTCTTAAGTGCAATTCAAGCTTGCGCAGACATGGTATGTCTTGAAAAGGGAAAATGGCTTCACCACAAACTCATTATGTATGGTG TAGAGAAGGATCTTTACATAGAAACTGCTCTAACTGATATGTATGCAAAGTGTGGAGATCTTCGAACTGCCGAAGGTGTTTTTCATAGCATGTCAGAAAA GAGTGTGGTGTCATGGAGTGCGATGATTTCTGGATATGGAATGCATGGTCGTATTGATGCTGCAATCACTTTCTTCAATCAAATGGTAGAATTGGGAATA AAACCAAATCATATTACCTTCATGAATATCCTATCAGCATGTAGTCATTCAGGATCTGTGGAACAAGGAAAGTTCTATTTTGACCTGATGAGAGATTTTG GCGTTGAACCAAACTCAGAACACTTTGCTTGTTTGGTTGACCTTCTGAGCCGTGCAGGTGATGTCAACGGAGCCTACAAAATAATCAACTCAATGCCATT TCCTGCAGATGCTAGTGTTTTGGGTAATTTACTTAATGGGTGTCGAATTCACCAGAGGATGGACATGATCCCCGAAATTGAAAAGGATCTCTTGAAGATC AGGACAAGTGATACCGGGCATTATTCCTTGTTATCTAATATCTACGCAGAAATAGGAAACTGGGCTGCTCGTGAGAACACCAGAGGTATTATGGAGCGTT CAGGCTATAAGAAGGTTCCTGGGTACAGTGCAATTTAA
AA sequence Show only first row Show all	>Potri.008G093000.1 pacid=42807243 polypeptide=Potri.008G093000.1.p locus=Potri.008G093000 ID=Potri.008G093000.1.v4.1 annot-version=v4.1 MTRYMPLFRSCKTLRQLNQLHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDSFMWGVLIKCHVWSHAFEEAILLYDKMLCNEAQITSF VFPSVLRACAGFGDMFIGAKVHGRIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLDW VIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPN VITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEALVLFVQMQKRGLM LDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCILGEFVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLVDQMYLNCLK ITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAITFFNQMVELGI KPNHITFMNILSACSHSGSVEQGKFYFDLMRDFGVEPNSEHFACLVDLLSRAGDVNGAYKIINSMPFPADASVLGNLLNGCRIHQRMDMIPEIEKDLLKI RTSDTGHYSLLSNIYAEIGNWAARENTRGIMERSGYKKVPGYSAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	0	1
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	1.00	0.9413
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	1.41	0.9398
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	2.44	0.9384
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	2.44	0.9329
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	3.74	0.9321
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	4.47	0.9367
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	4.89	0.9207
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	6.00	0.9384
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	6.32	0.9228
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	6.63	0.9220

Compare expression of checked genes

Potri.008G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.