Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13920 81 / 9e-17 Remorin family protein (.1) AT1G69325 64 / 1e-12 Remorin family protein (.1) AT5G61280 61 / 3e-10 Remorin family protein (.1) AT2G02170 53 / 1e-07 Remorin family protein (.1.2) AT1G67590 49 / 2e-06 Remorin family protein (.1.2) AT3G61260 47 / 7e-06 Remorin family protein (.1) AT5G23750 45 / 2e-05 Remorin family protein (.1.2) AT1G30320 45 / 5e-05 Remorin family protein (.1) AT2G41870 41 / 0.0006 Remorin family protein (.1) AT3G48940 40 / 0.0007 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160900 [exp] 290 / 1e-96 AT1G13920 99 / 1e-23 Remorin family protein (.1) Potri.015G049700 [exp] 72 / 3e-14 AT5G61280 113 / 2e-30 Remorin family protein (.1) Potri.008G178300 [exp] 46 / 2e-05 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.001G358600 [exp] 46 / 3e-05 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.010G056800 [exp] 45 / 4e-05 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.006G053200 [exp] 41 / 0.0007 AT3G57540 196 / 2e-61 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004665 [exp] 114 / 7e-29 AT1G13920 96 / 4e-22 Remorin family protein (.1) Lus10026649 [exp] 110 / 3e-27 AT1G13920 97 / 2e-22 Remorin family protein (.1) Lus10036964 [exp] 82 / 2e-17 AT1G13920 87 / 2e-19 Remorin family protein (.1) Lus10037111 [exp] 79 / 1e-16 AT1G13920 91 / 4e-21 Remorin family protein (.1) Lus10034714 [exp] 54 / 5e-08 AT5G61280 98 / 5e-24 Remorin family protein (.1) Lus10021650 [exp] 54 / 1e-07 AT2G47210 552 / 0.0 myb-like transcription factor family protein (.1) Lus10038522 [exp] 47 / 1e-05 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10023284 [exp] 46 / 3e-05 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10014785 [exp] 44 / 5e-05 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10018840 [exp] 42 / 0.0002 AT3G61260 206 / 1e-67 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.008G093300.2 pacid=42807915 polypeptide=Potri.008G093300.2.p locus=Potri.008G093300 ID=Potri.008G093300.2.v4.1 annot-version=v4.1 ATGGAGAATCTGCTGAAGCAAGTCAGGGTGAGATTTTTTGGACAGGAAAACTCAGAAGAGCCTCGAAGTGCCAGAGAAAGAACTCCATCCTTCGAAGAAG TGGGTTTTGCAGAGATTAAAAGACCTCGGAACTGGTTCCAGAGACAATTTTCTGGACAAATGAATAAAGATTATGATTCCAGTGGAATAGAGCATGTAAC TGCAGTGGCAGCTGCTGTTTATGCCATAGCATTATCGAACGCACCAAGCATCCAAGAACAAGGAAGGATCAGCAAGGGCCCTGAACCTTCTCTGACCCAG ATCAAAAGCAAAATGAAAGAATCGACTGATTTAATGTCAGAACCAGGTGAAGGTTCAATGAGAAGTCCTGAAAGTGCCCCAAGGATTAAAAGGATCTTAA CATCTACTGAAAGCCCCGAAAGACAAAATAGCAAGGTGCCAGAAACAGCTATCAAAGAAAAAACAACTAGTGATGATGCCGCTGCGGCCTCACAATTTAA AAGGACCCTAACAGTTACTGACAAGCCTGCTCCATCAATGAAGGAAACCCCAACCTTCGCTGATAAGAGCTTGAGCAGCACAAAGGATATGAAGCCTGAA AGTGCAGAGCCGGTGCCTACAACGAGGCCAAGAATTACAGCACCAAAGCCTGATCAGCCTCCTACAAGCAAACCTGCTACTCCAACAACTAAAATCGAAA GGAAGGTTTCAACAACACCTGGAATAGACGGGACAAATGCGGATGCTTGGGAGAGAGCTGAATTGTCTAAAATTCAAAAGAGGTATGAGAAAACGAATGC CAGAATACTCTCCTGGGAGAACGGGAAAAAGGAAAAGGCCAGAAATCGACTTAAGAAAACAGAGAATGGCTCGGAGGGAATACGATCAAAAGCCCTCAAA CAATTTCGTGCTGAGATGGCTGATATCGATCAGATTGCAGGAGCAGCAAAAGCAAAGGCAGCAGAAAGGCAAAGGAATGAAGAGCTCAGGGCAAAAGGAA AGGCAAATACAATCAGAAAAACAGGAAAGCTTCCTAGGACATGTTTCTGCTTTTGA
AA sequence Show only first row Show all	>Potri.008G093300.2 pacid=42807915 polypeptide=Potri.008G093300.2.p locus=Potri.008G093300 ID=Potri.008G093300.2.v4.1 annot-version=v4.1 MENLLKQVRVRFFGQENSEEPRSARERTPSFEEVGFAEIKRPRNWFQRQFSGQMNKDYDSSGIEHVTAVAAAVYAIALSNAPSIQEQGRISKGPEPSLTQ IKSKMKESTDLMSEPGEGSMRSPESAPRIKRILTSTESPERQNSKVPETAIKEKTTSDDAAAASQFKRTLTVTDKPAPSMKETPTFADKSLSSTKDMKPE SAEPVPTTRPRITAPKPDQPPTSKPATPTTKIERKVSTTPGIDGTNADAWERAELSKIQKRYEKTNARILSWENGKKEKARNRLKKTENGSEGIRSKALK QFRAEMADIDQIAGAAKAKAAERQRNEELRAKGKANTIRKTGKLPRTCFCF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13920			Remorin family protein (.1)		Potri.008G093300 [exp]	0	1
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	2.00	0.7499
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	2.44	0.7574
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.010G078400 [exp]	2.82	0.7317
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	5.00	0.7484
AT2G30000			PHF5-like protein (.1)		Potri.001G277800 [exp]	6.92	0.7465
AT4G39900			unknown protein		Potri.008G145000 [exp]	7.07	0.6951
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	7.93	0.7259
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G089800 [exp]	8.48	0.7113
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.012G070300 [exp]	8.60	0.6735
					Potri.008G045467 [exp]	8.71	0.7112

Compare expression of checked genes

Potri.008G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.