Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61240 513 / 0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G13910 447 / 8e-159 Leucine-rich repeat (LRR) family protein (.1) AT1G35710 150 / 2e-40 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G11080 149 / 9e-40 AtRLP35 receptor like protein 35 (.1) AT5G46330 148 / 2e-39 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 145 / 1e-38 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G61480 141 / 3e-37 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G07180 140 / 6e-37 ERL2 ERECTA-like 2 (.1) AT3G12610 134 / 2e-36 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT4G36180 139 / 3e-36 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160700 [exp] 568 / 0 AT5G61240 517 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.001G075000 [exp] 152 / 6e-41 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014232 [exp] 151 / 2e-40 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G124300 [exp] 149 / 5e-40 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G045500 [exp] 149 / 7e-40 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G237400 [exp] 147 / 3e-39 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G008375 [exp] 147 / 4e-39 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G113000 [exp] 144 / 3e-38 AT5G51350 1014 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G189000 [exp] 143 / 7e-38 AT5G51350 1058 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037108 [exp] 531 / 0 AT5G61240 550 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10026651 [exp] 529 / 0 AT5G61240 549 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10004662 [exp] 511 / 0 AT5G61240 543 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10036961 [exp] 478 / 3e-171 AT5G61240 488 / 1e-175 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10008712 [exp] 153 / 3e-41 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 151 / 1e-40 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10027688 [exp] 148 / 2e-39 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023681 [exp] 145 / 2e-38 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10006045 [exp] 144 / 6e-38 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038488 [exp] 143 / 7e-38 AT5G46330 726 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G093400.1 pacid=42807468 polypeptide=Potri.008G093400.1.p locus=Potri.008G093400 ID=Potri.008G093400.1.v4.1 annot-version=v4.1 ATGGCGCGTCCATCATTCTCCTTCTCTCTCATCCTCATTTTCCCTCTCCTCTTCCATCTCGCTCTCTCCAAAACCCTTAAACGCGACGTGAAAGCTTTGA ATGAAATAAAGGCATCGCTAGGTTGGAGAGTGGTGTACGCTTGGGTCGGCGACGATCCTTGTGGCGACGGTGACCATCCGCCGTGGTCCGGCGTCACTTG CTCTATCGCAGGAGATTACAGAGTCGTCACTGAATTGGAAGTGTACGCAGTGTCCATCGTGGGGCCATTTCCTACTTCTGTAACCAATTTGCTGGATCTT ACTAGACTGGATCTTCATAATAACAAGCTCACAGGGCCTATTCCTCCGCAAATTGGGCGATTGAAGCGTCTTAAGATACTTAATTTGAGGTGGAATAAAC TACAAGATGTTCTTCCTCCTGAAATAGGTGAACTGAAGAGTTTGACTCATCTTTATCTGAGCTTCAATGCTTTCAAAGGAGAAATCCCTAGGGAGCTTGC AAATCTGCCTGAGCTTCGGTATCTTTATCTACACGAGAATCGTTTTTCTGGGCGAATTCCTGCAGAATTGGGGACACTGAAAAATCTTCGGCACTTGGAT GTTGGCAACAATCATTTGGTGGGTACGATCAGGGAACTAATACGTTCTGATGGTTGCTTCCCTGCACTTCGCAACCTTTATTTAAATGATAATTATCTAA CTGGTGGAGTCCCCGCACAACTTGCAAACCTAACCAGTTTGGAAATCTTGCACCTATCACACAATAAAATGACTGGAATAATACCTGTTGGACTTGCTCA TATGCCTAGATTGACTTACTTGTACTTGGATCACAACAATTTTAATGGGAGAATTCCTGACGCCTTCTATAAGCACCCGTATTTGAAAGAATTATATGTT GAAGGAAATGCATTCAAGCCAGGTGTAAACCCAATAGGTGTTCACAAAGTCCTTGAAGTGTCTGATACTGATTTTGTAGTGTAG
AA sequence Show only first row Show all	>Potri.008G093400.1 pacid=42807468 polypeptide=Potri.008G093400.1.p locus=Potri.008G093400 ID=Potri.008G093400.1.v4.1 annot-version=v4.1 MARPSFSFSLILIFPLLFHLALSKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDHPPWSGVTCSIAGDYRVVTELEVYAVSIVGPFPTSVTNLLDL TRLDLHNNKLTGPIPPQIGRLKRLKILNLRWNKLQDVLPPEIGELKSLTHLYLSFNAFKGEIPRELANLPELRYLYLHENRFSGRIPAELGTLKNLRHLD VGNNHLVGTIRELIRSDGCFPALRNLYLNDNYLTGGVPAQLANLTSLEILHLSHNKMTGIIPVGLAHMPRLTYLYLDHNNFNGRIPDAFYKHPYLKELYV EGNAFKPGVNPIGVHKVLEVSDTDFVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.008G093400 [exp]	0	1
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	3.16	0.8085
AT4G32390			Nucleotide-sugar transporter f...		Potri.006G252500 [exp]	3.46	0.7940
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.010G152600 [exp]	3.46	0.7976	Pt-ARF1.6
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.010G253200 [exp]	3.74	0.7816	DWF5.2
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Potri.005G100500 [exp]	5.47	0.7823
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	5.65	0.8061
AT4G32680			unknown protein		Potri.018G035800 [exp]	10.58	0.7788
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	14.45	0.7517
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	18.43	0.7487	Pt-SMO2.2
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	18.97	0.7601

Compare expression of checked genes

Potri.008G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.