Plant FIBer expression Database

Potri.008G093500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69320 62 / 1e-13 CLE10 CLAVATA3/ESR-RELATED 10 (.1)
AT1G26600 59 / 4e-12 CLE9 CLAVATA3/ESR-RELATED 9 (.1)
AT1G73965 49 / 1e-08 CLE13 CLAVATA3/ESR-RELATED 13 (.1)
AT1G68795 47 / 7e-08 CLE12 CLAVATA3/ESR-RELATED 12 (.1)
AT1G63245 36 / 0.0006 CLE14 CLAVATA3/ESR-RELATED 14 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G160600
[exp]
107 / 2e-30 AT1G69320 48 / 1e-07 CLAVATA3/ESR-RELATED 10 (.1)
Potri.010G130400
[exp]
49 / 1e-08 AT1G68795 65 / 1e-14 CLAVATA3/ESR-RELATED 12 (.1)
Potri.008G115600
[exp]
49 / 2e-08 AT1G73965 67 / 1e-15 CLAVATA3/ESR-RELATED 13 (.1)
Potri.012G059600
[exp]
46 / 2e-07 AT1G68795 59 / 3e-12 CLAVATA3/ESR-RELATED 12 (.1)
Potri.003G124000
[exp]
37 / 0.0006 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037107
[exp]
50 / 1e-08 AT1G73965 51 / 3e-09 CLAVATA3/ESR-RELATED 13 (.1)
Lus10041496
[exp]
50 / 1e-08 AT1G68795 61 / 7e-13 CLAVATA3/ESR-RELATED 12 (.1)
Lus10036960
[exp]
50 / 2e-08 AT1G69320 52 / 1e-09 CLAVATA3/ESR-RELATED 10 (.1)
Lus10034267
[exp]
49 / 4e-08 AT1G68795 59 / 7e-12 CLAVATA3/ESR-RELATED 12 (.1)
PFAM info
Representative CDS sequence
>Potri.008G093500.1 pacid=42808405 polypeptide=Potri.008G093500.1.p locus=Potri.008G093500 ID=Potri.008G093500.1.v4.1 annot-version=v4.1
ATGAAGAACCCTTTTTCTTCAACCACTACCTTGTCTAGTCACGGCCTCCTAATCTTGGCTCTGCTCCTCCTCTTCTTTGTCATATCATCAACCGCCACTG
GAGTCCCAACCTCTGCTTCACTTGAGACATCTTCAAGAAACCAGCACCACCGCTTCAAGAGTCAACACCATTCTTGTGGTTCTTTCCCTCATAAAAGCTC
CTCACGTTCTTGGTGCATTCGGTTTCAAAGAATGAACGGGCGGCGACATCTAGGGTCACCACTTCCACCACCACTACCACCACCTATTGAGATTGATCCA
AGATATGGTGTTGAGAAGAGGCTAGTACCTTCTGGGCCAAACCCTCTGCATAATTGA
AA sequence
>Potri.008G093500.1 pacid=42808405 polypeptide=Potri.008G093500.1.p locus=Potri.008G093500 ID=Potri.008G093500.1.v4.1 annot-version=v4.1
MKNPFSSTTTLSSHGLLILALLLLFFVISSTATGVPTSASLETSSRNQHHRFKSQHHSCGSFPHKSSSRSWCIRFQRMNGRRHLGSPLPPPLPPPIEIDP
RYGVEKRLVPSGPNPLHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69320 CLE10 CLAVATA3/ESR-RELATED 10 (.1) Potri.008G093500
[exp]
0 1
AT1G79770 Protein of unknown function (D... Potri.001G188700
[exp]
1.00 0.9717
Potri.007G119100
[exp]
2.82 0.9512
AT3G24140 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (... Potri.017G054500
[exp]
3.87 0.9453
AT5G23530 ATCXE18 carboxyesterase 18 (.1) Potri.019G014306
[exp]
5.19 0.9533
AT5G25840 Protein of unknown function (D... Potri.018G045600
[exp]
8.12 0.9441
AT2G27690 CYP94C1 "cytochrome P450, family 94, s... Potri.013G075600
[exp]
8.77 0.9381
AT4G35160 O-methyltransferase family pro... Potri.013G122400
[exp]
9.16 0.9375
AT1G75100 JAC1 J-domain protein required for ... Potri.002G134300
[exp]
9.48 0.9382
AT3G24140 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (... Potri.001G314400
[exp]
11.83 0.9285
AT3G47570 Leucine-rich repeat protein ki... Potri.017G152500
[exp]
13.26 0.9407

Potri.008G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.