Plant FIBer expression Database

Potri.008G094100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26520 496 / 6e-177 Cobalamin biosynthesis CobW-like protein (.1)
AT1G15730 178 / 1e-51 Cobalamin biosynthesis CobW-like protein (.1)
AT1G80480 177 / 3e-51 PTAC17 plastid transcriptionally active 17 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G133500
[exp]
231 / 4e-72 AT1G80480 416 / 2e-143 plastid transcriptionally active 17 (.1)
Potri.001G201400
[exp]
177 / 5e-51 AT1G80480 442 / 6e-153 plastid transcriptionally active 17 (.1)
Potri.003G030100
[exp]
176 / 5e-51 AT1G80480 607 / 0.0 plastid transcriptionally active 17 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004653
[exp]
510 / 0 AT1G26520 540 / 0.0 Cobalamin biosynthesis CobW-like protein (.1)
Lus10026658
[exp]
508 / 0 AT1G26520 539 / 0.0 Cobalamin biosynthesis CobW-like protein (.1)
Lus10018172
[exp]
181 / 1e-52 AT1G80480 610 / 0.0 plastid transcriptionally active 17 (.1)
Lus10025665
[exp]
181 / 2e-52 AT1G80480 606 / 0.0 plastid transcriptionally active 17 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02492 cobW CobW/HypB/UreG, nucleotide-binding domain
CL0023 PF07683 CobW_C Cobalamin synthesis protein cobW C-terminal domain
Representative CDS sequence
>Potri.008G094100.1 pacid=42805815 polypeptide=Potri.008G094100.1.p locus=Potri.008G094100 ID=Potri.008G094100.1.v4.1 annot-version=v4.1
ATGGAGAAGGAAGAAGACGATGCGCCTCTAGCAGTTGAACTTGAAGAAACCGTACCAGTAAAACCCTCCTCCTCTCATTCAAAACAACCTCAAGGCGAAG
ACGTTCCTGTTGGAGTCACGGTCATCACGGGCTATCTGGGCTCTGGCAAATCCACTCTTGTTAATCATATCTTGAATACTCAACATGGAAAGAGGATCGC
TGTCATTTTGAATGAGTTTGGTGAAGAAATTGGAGTTGAGAGGGCAATGATAAATGAAGGAGAAGATGGTGCTCTTGTTGAAGAGTGGGTTGAACTTGCT
AATGGCTGTGTATGCTGCACTGTTAAGCATAGTTTAGTTCAAGCACTAGAGCAACTTGTTCAGATGAAGGAAAGACTCGATCATATATTGCTTGAGACCA
CAGGGCTAGCAAATCCTGCTCCACTTGCTTCTGTTCTTTGGCTGGATGATCAGTTGGAATCAGCTGTCAAGCTTGATTCTATAATAACTGTTGTGGATGC
CAAAAACCTTCATTATCAGCTCAATGAGCTTCAGAATTCATCTTCGTTTCCCGAAGCATCTCTTCAAATAGCATTTGCGGATGTTATCATTCTTAACAAG
GTTGATTTGGTTTCTTTGGGAGGTTCTGGAGAGGCTTTGAAGGAACTAGAAAATGAAATACATAAGATCAACTCCCTTGCTAATATCATTCATTCTGTTC
GGTGTCAAGTAGACTTATCTAAGATATTAAACTGCCGGGCATATGATTCCAAACACTTTGGTCATTTGGAAGTGTTATTAGAGGAAAGCAAGTCTTTATC
TACCAGTGATCTTCATGATTCCAGCTTGCGAACTTTATGTATCTGTGAGTCGCAGAAGGTTGATCTTGATAAGGTTCGCCTGTGGCTTGAGGAGATTCTG
TGGGACAAGAAAGATGGCATGGATGTATACCGCTGCAAAGGGGTTTTATATGTTAGAAACTCTGATGAACTACATACTTTGCAGGCTGTGCGGGAGTTAT
ATGACATTGTTCCAGCTCGCAAGTGGAGAAGCGATGAAAATCAAATTAACAAAATAGTTTTTATAGGTCATAACCTGAAGGAGGATGTTCTTATTAATTC
CTTCAGAGATTGTATAGTAACAACTTAG
AA sequence
>Potri.008G094100.1 pacid=42805815 polypeptide=Potri.008G094100.1.p locus=Potri.008G094100 ID=Potri.008G094100.1.v4.1 annot-version=v4.1
MEKEEDDAPLAVELEETVPVKPSSSHSKQPQGEDVPVGVTVITGYLGSGKSTLVNHILNTQHGKRIAVILNEFGEEIGVERAMINEGEDGALVEEWVELA
NGCVCCTVKHSLVQALEQLVQMKERLDHILLETTGLANPAPLASVLWLDDQLESAVKLDSIITVVDAKNLHYQLNELQNSSSFPEASLQIAFADVIILNK
VDLVSLGGSGEALKELENEIHKINSLANIIHSVRCQVDLSKILNCRAYDSKHFGHLEVLLEESKSLSTSDLHDSSLRTLCICESQKVDLDKVRLWLEEIL
WDKKDGMDVYRCKGVLYVRNSDELHTLQAVRELYDIVPARKWRSDENQINKIVFIGHNLKEDVLINSFRDCIVTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G26520 Cobalamin biosynthesis CobW-li... Potri.008G094100
[exp]
0 1
AT5G49510 PFD3, PDF3 prefoldin 3 (.1.2) Potri.008G103400
[exp]
4.79 0.7067
AT4G38670 Pathogenesis-related thaumatin... Potri.009G132200
[exp]
18.33 0.6990
AT1G63460 ATGPX8 glutathione peroxidase 8 (.1) Potri.001G105100
[exp]
18.65 0.7057
AT5G02440 unknown protein Potri.001G238900
[exp]
23.23 0.6898
AT1G14300 ARM repeat superfamily protein... Potri.013G124050
[exp]
23.87 0.6657
AT4G31600 UDP-N-acetylglucosamine (UAA) ... Potri.006G270700
[exp]
27.45 0.6338
AT4G18930 RNA ligase/cyclic nucleotide p... Potri.011G075600
[exp]
35.94 0.6450
AT1G47820 unknown protein Potri.014G121300
[exp]
37.81 0.6587
AT2G33630 NAD(P)-binding Rossmann-fold s... Potri.002G005100
[exp]
39.54 0.6260
AT5G57230 Thioredoxin superfamily protei... Potri.006G076300
[exp]
43.31 0.6556

Potri.008G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.