Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HIUHASE.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26560 798 / 0 BGLU40 beta glucosidase 40 (.1) AT5G54570 616 / 0 BGLU41 beta glucosidase 41 (.1) AT3G18080 541 / 0 BGLU44 B-S glucosidase 44 (.1) AT3G18070 520 / 0 BGLU43 beta glucosidase 43 (.1.2) AT5G24550 492 / 1e-170 BGLU32 beta glucosidase 32 (.1) AT2G44450 486 / 1e-168 BGLU15 beta glucosidase 15 (.1) AT5G44640 481 / 8e-167 BGLU13 beta glucosidase 13 (.1) AT5G36890 477 / 2e-165 BGLU42 beta glucosidase 42 (.1.2) AT2G44480 478 / 3e-165 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 479 / 5e-165 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159900 [exp] 960 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 618 / 0 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.012G049300 [exp] 531 / 0 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.004G040700 [exp] 522 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 518 / 0 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.T085301 [exp] 516 / 2e-180 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 516 / 2e-180 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G222900 [exp] 502 / 6e-175 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 502 / 8e-175 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037098 [exp] 776 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 772 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 771 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10026657 [exp] 668 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10009218 [exp] 621 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 603 / 0 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10037987 [exp] 545 / 0 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10031235 [exp] 540 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 538 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 538 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.008G094200.4 pacid=42807527 polypeptide=Potri.008G094200.4.p locus=Potri.008G094200 ID=Potri.008G094200.4.v4.1 annot-version=v4.1 ATGCTACTGAGAAGAGGCATTGCCTTGGTTATAATAGTGTCAGTAGCTTTTCAGATCCAGACATGCTTGTCACAGATTAACAGGGCAAGTTTTCCGAAAG GGTTTGTCTTTGGGACGGCCTCTTCTGCTTTCCAGTATGAAGGAGCGGTGAAGGAGGATGGAAGGGGACCGAGTGTTTGGGACAAATTTTCACATACTTT TGGCAAGATAATTGATTTCAGCAATGCCGATGTGGCTGTGGATCAATACCACCACTTTGATGAAGACATAAAACTTATGAAGGATATGGGAATGGATGCC TACAGATTTTCAATTTCTTGGACTCGAATATATCCTAATGGAACAGGGAAAATCAATCAGGCAGGAGTTGATCATTACAACAAATTCATCAACGCTTTAC TTGCTCAAGGAATTGAGCCTTATGTGACCCTATTCCATTGGGACCTTCCTCAAGCCTTGCACGACAGATATAATGGATGGCTCAGCCCCCAGATCATAAA GGACTTTGCAACATTCGCAGAGACATGCTTTCAGAATTATGGTGACAGGGTGAAGAATTGGATCACGTTCAATGAGCCTCATACAGTTTCTATTCAGGGT TATGATGTGGGTCTCCAGGCTCCAGGAAGATGCTCTATCCTTCTCCACCTCTTCTGCCGGGCTGGAAATTCAGCAACTGAGCCCTATATAGTCGCCCACA ACATGCTTCTTTCTCATGGGGCTGCGGCAGATATTTACAGGAAAAAGTACAAGGCAAAACAACAAGGATCTGTGGGCATATCACTTGATGTGATATGGTT TGAACCAGCAACAAACAGCACGAAAGACATCGAAGCAGCCCAAAGAGCCCAGGATTTTCAGCTTGGCTGGTTTATTGAACCTTTGATCTTAGGCGACTAT CCAATCTCAATGAGAAACAGAGTCGGAGATAGACTGCCAAAGTTTACCGAAAATGATGCTGCTCTTGTTAAAGGGTCTTTGGATTTTGTTGGTATCAATC ACTACACAACATTTTATGCACGAAGCAATGACTCTCTACTTGGCGATGTAATTGGCAAAGTCCTTAATGACTCTGTCGCGGACTCTGGTGCCATAACCCT TCCATTCGGTGAAAATAAGAAGCCCATTGGAGACCGGGCGAATTCTATATGGTTGTACATAGTACCTCAAGGGATGAGAAGCTTAATGAATCACATCAGG CAAAAGTACGGGAATCCTCCCGTCATTATAACTGAAAATGGGATGGATGATCCAAATAACGCCTTGACCCCCATTAAAGACGCTCTGAAGGACGGGAAAA GGATCAAATACCACAATGACTATCTGACAAACCTGCTAGCTTCTATTAAAGAAGATGGTTGCAATGTGAAAGGGTATTTTGTATGGTCTCTTTTGGATAA TTGGGAGTGGGCAGCTGGTTACACTTCAAGGTTTGGTCTCTACTTTGTGGATTACAAGGACAAGCTGAAGAGGTACCCCAAGGATTCTGTACAGTGGTTC AAAAAGTTCTTGACTTCTAGTTAA
AA sequence Show only first row Show all	>Potri.008G094200.4 pacid=42807527 polypeptide=Potri.008G094200.4.p locus=Potri.008G094200 ID=Potri.008G094200.4.v4.1 annot-version=v4.1 MLLRRGIALVIIVSVAFQIQTCLSQINRASFPKGFVFGTASSAFQYEGAVKEDGRGPSVWDKFSHTFGKIIDFSNADVAVDQYHHFDEDIKLMKDMGMDA YRFSISWTRIYPNGTGKINQAGVDHYNKFINALLAQGIEPYVTLFHWDLPQALHDRYNGWLSPQIIKDFATFAETCFQNYGDRVKNWITFNEPHTVSIQG YDVGLQAPGRCSILLHLFCRAGNSATEPYIVAHNMLLSHGAAADIYRKKYKAKQQGSVGISLDVIWFEPATNSTKDIEAAQRAQDFQLGWFIEPLILGDY PISMRNRVGDRLPKFTENDAALVKGSLDFVGINHYTTFYARSNDSLLGDVIGKVLNDSVADSGAITLPFGENKKPIGDRANSIWLYIVPQGMRSLMNHIR QKYGNPPVIITENGMDDPNNALTPIKDALKDGKRIKYHNDYLTNLLASIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDKLKRYPKDSVQWF KKFLTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.008G094200 [exp]	0	1	Pt-HIUHASE.1
AT4G22250			RING/U-box superfamily protein...		Potri.014G158900 [exp]	3.16	0.9267
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	3.46	0.9127
AT3G57830			Leucine-rich repeat protein ki...		Potri.016G050800 [exp]	4.24	0.9167
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	5.29	0.9027
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	5.65	0.9062
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	13.26	0.8929
AT3G21710			unknown protein		Potri.011G135700 [exp]	14.69	0.8913
AT3G13480			unknown protein		Potri.001G003300 [exp]	15.19	0.8989
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	17.32	0.8943	MLO4.1
AT3G06840			unknown protein		Potri.003G073200 [exp]	18.65	0.8718

Compare expression of checked genes

Potri.008G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.