Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26580 280 / 3e-88 unknown protein AT2G03470 211 / 3e-62 MYB ELM2 domain-containing protein (.1.2) AT1G13880 209 / 6e-62 ELM2 domain-containing protein (.1) AT4G11400 105 / 8e-24 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 96 / 8e-21 GYRB3 DNA GYRASE B3 (.1) AT2G46040 60 / 3e-09 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159700 [exp] 733 / 0 AT1G26580 253 / 1e-77 unknown protein Potri.017G091900 [exp] 214 / 3e-63 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 207 / 8e-61 AT1G26580 219 / 2e-65 unknown protein Potri.014G086700 [exp] 112 / 6e-26 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 108 / 1e-24 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 105 / 2e-24 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 103 / 5e-23 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026655 [exp] 284 / 8e-90 AT1G26580 237 / 3e-72 unknown protein Lus10037097 [exp] 268 / 9e-83 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 265 / 6e-82 AT1G26580 253 / 1e-77 unknown protein Lus10004658 [exp] 260 / 1e-80 AT1G26580 243 / 1e-74 unknown protein Lus10000680 [exp] 197 / 6e-57 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 192 / 9e-56 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10032272 [exp] 112 / 3e-27 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 110 / 9e-26 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 81 / 8e-16 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 79 / 4e-15 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G094400.1 pacid=42805969 polypeptide=Potri.008G094400.1.p locus=Potri.008G094400 ID=Potri.008G094400.1.v4.1 annot-version=v4.1 ATGGGATTTAAACGGCCTTTTGATGATGAAGAGTTTCAGGATCTTCCTTTTAAGCAGGCAAGACAGGTGGAATGTTGCAATAAGTTGACTCAATTGTCAG AAACTGGTGCACATTGTAATGTGCCTAAGAAACCTGATGTTGCAGATGGCTATGGGAGCAACTTTTTCAAAATTCAGTGGCATGAGACATTTGAGAATGA CTTAATTGAAGTTTCAAATTTTGCTAAAGATTCTGACTCCAGTGATCCTTTGTCGTTAGTCACCAGCAGTTCCAGTGATGAAGATTTTGGGTCCTGGCCA GCATCTTACTCTTCTCTTTCTTCTGAATATTTTGAGGCTGAGTTTCCACAGAAAACATCCATACATCTGGCAGATGTCTACTCATCCTATTTGGATGAAT TTCCTAGGAAACAAGTTCCTCTTGGACCAAATCACCAAGCCAGCATTCCATTGTGGGACAGGCATATGAAGAAGGATAAGCTAGCAAACTCATTCAATAC AAATGGTTCCTCGTTGTCTGAATCAGACCATCACATTTATAATGATAATGAAGAGAAGTTGGTGGGAACTTGTATCATTCCAATGCCGGATACAAAACCA TGTCTGTCCACTAGGTATGAGGCTGCTTGTGGCAGAATTGATTGTGAGTGCCTGGATGAAGGCTCTGTCAGATGTGCGCGGCAGCACATACTGGAAGCAC GGGAAGAATTATTAAAATCTACTGGGCATGAAAATTTTGTAAACTTGGGGTTTTATGACATGGGAGAGGAGGTGTCTTGTAAATGGGCCAAGGAAGAGGA ACGGGTTTTCCATGAAGTTGTTTATTCCAGGCCAGAGTCCTTGGGCCAGAATTTTTGGAAGCACTTGGCACAAGTGTTTCCTGATAGAACCACAAAGGAA ATTGTCAGCTATTACTTCAATGTCTTTATGCTTCGGAAGCGAGCTGCTCAGAACAGATCTAACCTGCTGGACATTGACAGTGATGACGATGAATTGCCTC GGATCAATAGAGGCTCCTATATTCAAGTTTTAGAAGAAGATGCAGATTCTGATCTCGAGTCCCCTGTTGATCAATATGATCATGCAGACATGGGAGGCGA TATTCTTGAAGATGACATCAATGATGACAGTGATGATGATGCTGGTGGTGCTTCTGATGAGGTGGGAGATGGTAGTGGAGACACCACAGGAGAAGATTCT GGGATAGATTATGCCTCAGAAACACTTGATATGAACAGTATAGATCCTGCTATTAAGCATATGGACGATAATGCTGGTCAAGATGGGTTGGATTTCATTG TTCAAGATGACTCTTGCATGTCTTTTGAGTTCCAAGCTGATAAAGTTGACTCTTGTGGTCCAGTTGAGACCAGGGGTGCTCTGCATATAAATAGAAGTGA CTATAGCAAATGCTTGCCCAGTAAAGTAGATGGACGTGGTGATGATGTGGATCAGGTATACTTGTTGGACCTCTGTGATGCTAAAGATTGGGATGCCCGT TACTTTAGTCCAATCAGGGGTGTTGATCTTCTTCCTACAAGTAACATCATTGAAGAGATTTTTGGACAAGGAACCTGTGACAACCAGACAAGAGATGCCA ATGGCATCAGCTAG
AA sequence Show only first row Show all	>Potri.008G094400.1 pacid=42805969 polypeptide=Potri.008G094400.1.p locus=Potri.008G094400 ID=Potri.008G094400.1.v4.1 annot-version=v4.1 MGFKRPFDDEEFQDLPFKQARQVECCNKLTQLSETGAHCNVPKKPDVADGYGSNFFKIQWHETFENDLIEVSNFAKDSDSSDPLSLVTSSSSDEDFGSWP ASYSSLSSEYFEAEFPQKTSIHLADVYSSYLDEFPRKQVPLGPNHQASIPLWDRHMKKDKLANSFNTNGSSLSESDHHIYNDNEEKLVGTCIIPMPDTKP CLSTRYEAACGRIDCECLDEGSVRCARQHILEAREELLKSTGHENFVNLGFYDMGEEVSCKWAKEEERVFHEVVYSRPESLGQNFWKHLAQVFPDRTTKE IVSYYFNVFMLRKRAAQNRSNLLDIDSDDDELPRINRGSYIQVLEEDADSDLESPVDQYDHADMGGDILEDDINDDSDDDAGGASDEVGDGSGDTTGEDS GIDYASETLDMNSIDPAIKHMDDNAGQDGLDFIVQDDSCMSFEFQADKVDSCGPVETRGALHINRSDYSKCLPSKVDGRGDDVDQVYLLDLCDAKDWDAR YFSPIRGVDLLPTSNIIEEIFGQGTCDNQTRDANGIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26580			unknown protein		Potri.008G094400 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	2.44	0.6144	CUL3.2
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.010G254400 [exp]	5.00	0.6303
AT3G47670			Plant invertase/pectin methyle...		Potri.001G108200 [exp]	7.34	0.6124
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.010G226500 [exp]	24.65	0.5733
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Potri.002G013100 [exp]	25.25	0.5687
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.001G356100 [exp]	25.98	0.5725	Pt-ERF3.1,ERF40
AT3G58630	Trihelix		sequence-specific DNA binding ...		Potri.003G118600 [exp]	27.45	0.5637
AT4G05440		EDA35	embryo sac development arrest ...		Potri.006G050600 [exp]	65.72	0.5178
AT3G51940			unknown protein		Potri.001G021100 [exp]	76.28	0.5308
AT3G05320			O-fucosyltransferase family pr...		Potri.015G117500 [exp]	91.48	0.4908

Compare expression of checked genes

Potri.008G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.