Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26610 223 / 3e-67 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 95 / 5e-21 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 72 / 1e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 63 / 1e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 59 / 2e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28200 57 / 7e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 49 / 3e-06 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT4G35280 49 / 3e-06 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT5G04390 49 / 4e-06 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G17180 47 / 2e-05 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159600 [exp] 783 / 0 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 81 / 7e-16 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.004G118100 [exp] 73 / 2e-13 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.014G066200 [exp] 66 / 2e-11 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.001G157700 [exp] 65 / 4e-11 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 64 / 6e-11 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 64 / 7e-11 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 64 / 9e-11 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143600 [exp] 62 / 6e-10 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037095 [exp] 238 / 1e-72 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10004659 [exp] 221 / 3e-66 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 179 / 1e-50 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10036889 [exp] 168 / 2e-48 AT1G26610 151 / 9e-43 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 82 / 2e-18 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 80 / 8e-16 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 76 / 2e-14 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 72 / 3e-13 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 71 / 6e-13 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 64 / 3e-11 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.008G094500.1 pacid=42805888 polypeptide=Potri.008G094500.1.p locus=Potri.008G094500 ID=Potri.008G094500.1.v4.1 annot-version=v4.1 ATGGAAACCAATCAAAAGAACAACTTTGTTTGCAAGTATTGCAACAAAAGATATCCCTGTGGCAAGTCCTTGGGTGGTCATATTAGGATCCATTTGAATG CTAATGGAACTTGCTCAACTGATGAAGATGCTAAGGTTAAGATGAGCACGACCGAAAACAAAAGTAAGCAAATCTCTGTGTCTGAAGCTGGTGGTCAGTT TGGCTATGCTCTTAGAGAGAATCCTAAGAAAACAACCAGGTTTGTGGCGGATTCCAGCAATACTACTTCACTGCCAGAACAGCTGTGTAAAGAATGTGGT AAGGGGTTTCAATCACTGAAAGCGCTTTGTGGTCACATGGCTTGTCACTCTAAGAACTTCTTTCAAGACCAGTCGGGGGCTACTATGAAGTTGAAAGGAA TCATCATGGACAAGCAGTCAGATAGTGAGACAACTGATCCGATTGAGCCAAGGAGATCCAAAAGAATGAGGTACAAGGCTATTGATGTTTACACTTCTTC ATTATCTTTGACAAATACTGCCTCTTTATCTTCTACTTCTGATATAGAGCAAGAACAAGAGGAAGTGGCTAAATCTTTGATGATGTTGTCCAAGGATTCT GGTTTTAAAGGTTGTTTTAGTTCAGTCGCAGATTCTTCAGATAACAATTCCGTGGTTTTAGAGGGTAAATCATCATATATGAAAATGAGGATTAATGTAA ATGACGGTATTAATTTCGTGTCCAGCGGTATCGAGTCACTGGAGATGAAGAAAGCAACGCAAAGGGGGGTAAATTCTGCTGAGAATGATCAGTCTGAGAA TTCTGATTCCGGGTACTTTAGGAACGGTCCCAAGAAGGTTGAATCAGATGTTTCTGTTCATGGGTTTGCTAGGAATGGTGAATTCAAGAAGCAAGAAGTG GATTCTGTGTTTAGTTATGATGATGAGTTGGATGCTGAATCAGGGAAAAGATTAAGCATGTCAAGGCATATTAGAACTCAATTGGGGAAGGATTTCATCG TGGATGATGTATATAATCAAGGTGATAGAGCTTTGATGGATTCGCAAAAGGGATGCAAGAATGAGTCATGCGAATATCTTAGCAGCAGCGTTCGAAACAG GGGCAGCAAATGTGTTTCTCTCGGGGGACGCAGAACCAGCCATAACAGGATTAATGGCTGCAGTGATTCAATATATGAGAGTGGGGAGAACAGCGTAGAT ACTGACTATGTCCCTAATCCAATTGCTAATAGTAGTAAGATGATTCAATCTAGAAGTGGAAAAACTCCAATTGAGAAGAGTTCTTCTGGAAAAGCAGAGA AAAAATTGGGGTTGAAAATAGAGAAAGTACACGAATGTCCTTTCTGTCCCAAGGTTTTCCGATCAGGGCAAGCTTTGGGTGGTCATAAGAGGTCCCATTT TATTGGAGCGGCCAGGGTTAGACCTGTGGTGATTGAGCAAGATGTGCCTGAGATATCCACTCGGGGGCTAATCGATCTTAATCTTCCTGTCTCCATGGAG GAAGAGTCAGATGGGTTAGGACCGTGGTAA
AA sequence Show only first row Show all	>Potri.008G094500.1 pacid=42805888 polypeptide=Potri.008G094500.1.p locus=Potri.008G094500 ID=Potri.008G094500.1.v4.1 annot-version=v4.1 METNQKNNFVCKYCNKRYPCGKSLGGHIRIHLNANGTCSTDEDAKVKMSTTENKSKQISVSEAGGQFGYALRENPKKTTRFVADSSNTTSLPEQLCKECG KGFQSLKALCGHMACHSKNFFQDQSGATMKLKGIIMDKQSDSETTDPIEPRRSKRMRYKAIDVYTSSLSLTNTASLSSTSDIEQEQEEVAKSLMMLSKDS GFKGCFSSVADSSDNNSVVLEGKSSYMKMRINVNDGINFVSSGIESLEMKKATQRGVNSAENDQSENSDSGYFRNGPKKVESDVSVHGFARNGEFKKQEV DSVFSYDDELDAESGKRLSMSRHIRTQLGKDFIVDDVYNQGDRALMDSQKGCKNESCEYLSSSVRNRGSKCVSLGGRRTSHNRINGCSDSIYESGENSVD TDYVPNPIANSSKMIQSRSGKTPIEKSSSGKAEKKLGLKIEKVHECPFCPKVFRSGQALGGHKRSHFIGAARVRPVVIEQDVPEISTRGLIDLNLPVSME EESDGLGPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.008G094500 [exp]	0	1
AT4G33890			unknown protein		Potri.009G090400 [exp]	8.83	0.7154
AT4G33890			unknown protein		Potri.009G090500 [exp]	11.48	0.7561
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.005G060100 [exp]	11.83	0.6878
AT1G69360			Plant protein of unknown funct...		Potri.017G088900 [exp]	12.72	0.7109
AT3G16510			Calcium-dependent lipid-bindin...		Potri.010G024200 [exp]	32.31	0.6908	SRC2.1
AT1G69360			Plant protein of unknown funct...		Potri.004G125900 [exp]	33.31	0.6245
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.009G144300 [exp]	39.19	0.7021
AT1G02290			unknown protein		Potri.002G184000 [exp]	47.16	0.6931
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Potri.008G101200 [exp]	49.14	0.6947
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133340 [exp]	52.00	0.7044

Compare expression of checked genes

Potri.008G094500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.