Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DRL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13870 452 / 1e-161 DRL1, AtKTI12 DEFORMED ROOTS AND LEAVES 1, calmodulin binding;purine nucleotide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037100 [exp] 509 / 0 AT1G13870 435 / 5e-155 DEFORMED ROOTS AND LEAVES 1, calmodulin binding;purine nucleotide binding (.1) Lus10036884 [exp] 118 / 8e-34 AT1G13870 87 / 1e-22 DEFORMED ROOTS AND LEAVES 1, calmodulin binding;purine nucleotide binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13671 [poplar] [flax] AAA_33 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.008G094600.1 pacid=42806861 polypeptide=Potri.008G094600.1.p locus=Potri.008G094600 ID=Potri.008G094600.1.v4.1 annot-version=v4.1 ATGGCTTTGGTTGTAATCTGCGGCCAGCCATGCAGTGGGAAGTCCACAGCTGCGTTTTTCCTAGCTGAAGCTCTCAAAGAATCAGAATCTAACTCAACCA TTAGAATAATTGATGAAGCTTCTTTTCATCTTGATCGTAATCAAAGTTATGCCAACATGACTGCAGAGAAGAATTTAAGAGGAGCGCTCCGGTCTGAAGT TGATAGATCTGTATCAAAAGACAATATAATCATAGTGGATTCTTTGAACAGTATCAAGGGTTACAGGTATGAGCTATGGTGTTTGGCTCGTGCTGCAGGA ATAAGATATATTGTGTTGTTTTGTGATGTCGAAGAAACTCAATGTAAAAAATGGAATGAACAACGTATGGAGAAGTGTGAAGCTACATATGATGATACTA TCTTTGAGGACCTGGCAAGAAGGTTTGAGAGGCCAGATAGAAGAAATCGATGGGATTCTCCTCTGTTTGAGTTATCGCCGTATAAAGATGGTATTCAGAA ATCTTCAGCTGCCATTGTAGATGCTGTTTCATACTTAACAAAAAAAGTGGACTCAAAAACTCGGGATGTTAAAATTTTACATCCAACAATTGCTACACAA AGTACACGATTTTCGGAGGCAAATTCTCTATACGAGCTGGACAGGGCAACACAAGAGGTTACCAATGTCATTGTAGAAGCACAATCCCAGTCAATCGGAG GACCTCTAAATGGAATTTCTCTTGGCCAGGGTTTACCAACTCTTAATATGTCAAGATCAGTTGGGCTACCAGAGTTACGGAGACTGCGTCGGACATTCAT CAAGTTGACAGGTCAGACAAGCTTAAGTGGACCTCCCCCTCCTTCGGATGCAGAGAGCGCAAAAAGGATGTTTGTTGATTACTTGAACAGGGAATTGGGA ACTACTTGA
AA sequence Show only first row Show all	>Potri.008G094600.1 pacid=42806861 polypeptide=Potri.008G094600.1.p locus=Potri.008G094600 ID=Potri.008G094600.1.v4.1 annot-version=v4.1 MALVVICGQPCSGKSTAAFFLAEALKESESNSTIRIIDEASFHLDRNQSYANMTAEKNLRGALRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAG IRYIVLFCDVEETQCKKWNEQRMEKCEATYDDTIFEDLARRFERPDRRNRWDSPLFELSPYKDGIQKSSAAIVDAVSYLTKKVDSKTRDVKILHPTIATQ STRFSEANSLYELDRATQEVTNVIVEAQSQSIGGPLNGISLGQGLPTLNMSRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDAESAKRMFVDYLNRELG TT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13870		DRL1, AtKTI12	DEFORMED ROOTS AND LEAVES 1, c...		Potri.008G094600 [exp]	0	1	DRL1.1
AT1G27300			unknown protein		Potri.003G170700 [exp]	2.00	0.7735
AT1G20460			unknown protein		Potri.005G248300 [exp]	4.89	0.7003
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	6.48	0.7417
AT2G31090			unknown protein		Potri.019G090500 [exp]	8.00	0.7377
AT3G47160			RING/U-box superfamily protein...		Potri.009G045400 [exp]	10.39	0.6694
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	12.72	0.7600
AT5G04270			DHHC-type zinc finger family p...		Potri.010G226100 [exp]	12.96	0.6477
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	14.38	0.7097
AT5G49120			Protein of unknown function (D...		Potri.010G011700 [exp]	15.49	0.7226
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	16.88	0.6693

Compare expression of checked genes

Potri.008G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.