Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GRF12.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26480 438 / 2e-157 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 395 / 1e-140 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G34760 392 / 1e-139 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 375 / 7e-133 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT4G09000 356 / 6e-125 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G35160 354 / 3e-124 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT5G38480 352 / 1e-123 RCI1, GRF3 general regulatory factor 3 (.1.2) AT1G78300 352 / 2e-123 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT3G02520 348 / 9e-122 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G65430 335 / 6e-117 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159300 [exp] 474 / 8e-172 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.002G097500 [exp] 412 / 1e-147 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.011G110900 [exp] 409 / 5e-146 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.005G164500 [exp] 407 / 2e-145 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.001G392200 [exp] 405 / 2e-144 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.004G101700 [exp] 358 / 8e-126 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 353 / 9e-124 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 348 / 7e-122 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 348 / 9e-122 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036896 [exp] 451 / 2e-162 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10026660 [exp] 442 / 5e-159 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10004652 [exp] 441 / 3e-158 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10001894 [exp] 389 / 4e-138 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 385 / 2e-136 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10029835 [exp] 383 / 2e-135 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 383 / 3e-135 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10036471 [exp] 375 / 1e-132 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10033609 [exp] 381 / 4e-132 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10013908 [exp] 380 / 5e-132 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [poplar] [flax] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Potri.008G095000.2 pacid=42807022 polypeptide=Potri.008G095000.2.p locus=Potri.008G095000 ID=Potri.008G095000.2.v4.1 annot-version=v4.1 ATGTCAACCGAGAAGGAGAGGGAGACTCATGTTTACATGGCCAAGCTCGCTGAACAGGCCGAGCGCTATGACGAGATGGTTGAGAGCATGAAAAATGTTG CCAAACTTAATTGTGACCTGACTGTGGAGGAGAGGAACCTCCTCTCGGTGGGATACAAAAATGTAATTGGTGCTAGGCGGGCTTCTTGGCGGATCATGTC TTCAATTGAGCAGAAGGAAGAATCTAAAGGAAACGACAGCAATGTTAAACTGATTAAGGGATACCGCCAGAAGGTGGAGGAGGAACTCTCCAAGATTTGC AATGACATCTTGTCCATCATCGATGACCATCTGATCCCCTCTTCCGCCTCAGGAGAAGCAACCGTGTTCTACTACAAGATGAAAGGTGACTACTACCGCT ATCTAGCTGAGTTCAAGGCTGATCAGGAAAGGAAGGACGCAGCCGATCAGTCATTAAAGGGTTACGAGGCTGCTTCTGCCACTGCAAGCACAGATCTGCC TTCAACCCACCCAATTCGTCTTGGCCTTGCCCTTAACTTCTCTGTTTTCTACTATGAGATCATGAACTCTCCTGAGAGGGCCTGCCATCTGGCCAAACAA GCTTTCGACGAGGCAATTGCAGAGTTGGACACTTTAAGTGAGGAATCATACAAGGACAGCACCTTAATTATGCAGTTGTTAAGAGATAACCTCACTCTCT GGACTTCTGATTTGCCTGAAGATGGAGGTGATGATGACTTCAAAGGTGAAGAATCAAAGGAAAAACCTGCCGAAGGAGAGCACTGA
AA sequence Show only first row Show all	>Potri.008G095000.2 pacid=42807022 polypeptide=Potri.008G095000.2.p locus=Potri.008G095000 ID=Potri.008G095000.2.v4.1 annot-version=v4.1 MSTEKERETHVYMAKLAEQAERYDEMVESMKNVAKLNCDLTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNDSNVKLIKGYRQKVEEELSKIC NDILSIIDDHLIPSSASGEATVFYYKMKGDYYRYLAEFKADQERKDAADQSLKGYEAASATASTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ AFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDDDFKGEESKEKPAEGEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.008G095000 [exp]	0	1	Pt-GRF12.2
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	4.58	0.9381
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	8.36	0.9257
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	9.64	0.9240
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Potri.010G175000 [exp]	12.72	0.8876
AT5G21070			unknown protein		Potri.004G196600 [exp]	16.49	0.9222
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Potri.001G237200 [exp]	16.52	0.9205
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	16.88	0.9073
AT4G38660			Pathogenesis-related thaumatin...		Potri.002G020400 [exp]	17.32	0.9072
AT3G51325			RING/U-box superfamily protein...		Potri.005G109600 [exp]	17.49	0.9090
AT1G73140		TBL31	Plant protein of unknown funct...		Potri.001G376700 [exp]	18.97	0.9213

Compare expression of checked genes

Potri.008G095000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.