Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 140 / 2e-42 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G03505 121 / 4e-35 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G13830 118 / 1e-33 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 113 / 2e-31 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT5G61130 105 / 9e-29 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT5G08000 101 / 6e-27 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT1G26450 101 / 7e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G11820 93 / 3e-22 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G13600 86 / 6e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G30933 79 / 8e-19 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158900 [exp] 194 / 4e-63 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 126 / 2e-36 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.012G065750 [exp] 115 / 2e-32 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 95 / 1e-24 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 94 / 5e-24 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.004G010500 [exp] 97 / 2e-23 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 97 / 2e-23 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.005G003500 [exp] 94 / 1e-22 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.002G059600 [exp] 89 / 9e-22 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026662 [exp] 160 / 2e-49 AT1G18650 145 / 2e-43 plasmodesmata callose-binding protein 3 (.1) Lus10004650 [exp] 157 / 3e-48 AT1G18650 141 / 4e-42 plasmodesmata callose-binding protein 3 (.1) Lus10037071 [exp] 154 / 2e-47 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 140 / 1e-41 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 132 / 5e-38 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 126 / 1e-36 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 126 / 3e-36 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021619 [exp] 114 / 4e-31 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 92 / 3e-23 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10000278 [exp] 93 / 2e-22 AT1G79480 164 / 7e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.008G095300.1 pacid=42806152 polypeptide=Potri.008G095300.1.p locus=Potri.008G095300 ID=Potri.008G095300.1.v4.1 annot-version=v4.1 ATGGCTGTTTTAGTGTTTTTAGTGTTTTTCTGGGCACTCACTGGTCATTCATATGCCACCTACTGCATATGCAAGGATGGGATTGCTGACACACAGCTGC AAAAAGCCCTGGATTATGCTTGTGGAGCCGGAGCAGATTGTACCCAAATCGCTCAAAGCGGTCCTTGCTACCAGCCCAACACTGTAAAAGATCACTGCAG CTATGCTGTTAACAGCTACTTCCAGAAGAAAGGCCAAGCTGTTGGGAGCTGTGATTTTGCAGGAACTGCCGTGACTAGTGCGACTCTCCCTCAAAATGTA GCCTCCGGGTGTACATATCCTGCATCAGCAACTTCAAGCACCGGCAACACATCAAACTCGGGCACAGCACCGACGGGCACAAACACACCATCTTCTATAA TTCCGCCTCCTCCGTCAGCAGTGTTCACCGGATTAGGCCCAACGGGCACCACTGTTGTCAACGGTGTGGCTTCTCAATTTAAAGGCACTAACTTGTGGTT CATGGCATCTTCTTTAACCCTCTTGTTTTCAGTTCCCTTTCTGTTGTGGGGTTGA
AA sequence Show only first row Show all	>Potri.008G095300.1 pacid=42806152 polypeptide=Potri.008G095300.1.p locus=Potri.008G095300 ID=Potri.008G095300.1.v4.1 annot-version=v4.1 MAVLVFLVFFWALTGHSYATYCICKDGIADTQLQKALDYACGAGADCTQIAQSGPCYQPNTVKDHCSYAVNSYFQKKGQAVGSCDFAGTAVTSATLPQNV ASGCTYPASATSSTGNTSNSGTAPTGTNTPSSIIPPPPSAVFTGLGPTGTTVVNGVASQFKGTNLWFMASSLTLLFSVPFLLWG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.008G095300 [exp]	0	1
AT3G13310			Chaperone DnaJ-domain superfam...		Potri.011G166500 [exp]	3.00	0.8147
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	10.19	0.7321
AT1G23040			hydroxyproline-rich glycoprote...		Potri.010G113300 [exp]	11.74	0.7118
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.001G072000 [exp]	18.49	0.7389	ERF1.6
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.005G123200 [exp]	21.02	0.7835
AT5G58950			Protein kinase superfamily pro...		Potri.007G085300 [exp]	21.35	0.7704
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090600 [exp]	22.80	0.7679
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054700 [exp]	26.53	0.7448	Pt-HSP70.6
AT2G26210			Ankyrin repeat family protein ...		Potri.018G047000 [exp]	27.29	0.6695
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	30.74	0.6590

Compare expression of checked genes

Potri.008G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.