Plant FIBer expression Database

Potri.008G095500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03530 554 / 0 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
AT2G03590 548 / 0 ATUPS1 ureide permease 1 (.1)
AT2G03520 504 / 1e-177 ATUPS4 ureide permease 4 (.1)
AT1G26440 501 / 4e-176 ATUPS5 ureide permease 5 (.1.2.3.4)
AT2G03600 421 / 9e-146 ATUPS3 ureide permease 3 (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G095600
[exp]
597 / 0 AT2G03530 559 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036910
[exp]
578 / 0 AT2G03590 589 / 0.0 ureide permease 1 (.1)
Lus10037075
[exp]
573 / 0 AT2G03530 584 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
Lus10037074
[exp]
555 / 0 AT2G03590 575 / 0.0 ureide permease 1 (.1)
Lus10036911
[exp]
553 / 0 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF07168 Ureide_permease Ureide permease
Representative CDS sequence
>Potri.008G095500.5 pacid=42807911 polypeptide=Potri.008G095500.5.p locus=Potri.008G095500 ID=Potri.008G095500.5.v4.1 annot-version=v4.1
ATGCTTTCCAAGTGTCATTTTGCTTGCAGATTCCTACACGCTCTTCTATTTTATACCTTCTTCTTCGATTTTTTATTTCCTGATTTTTTACTTCTAACCA
CTACTACTCTTTATAGGCAACCCGACGATTTTTTTTTTTTAAAAAAAAACAGAAGAAATCATTTCAGATTTGCTCAGTATGGCCTCCTAAGAGGCACCAC
GCAGAATGAGTGGCTGAATTTGTTTCTTTGCTTGAAGGGTTTTTCAGGAATACCTTCATCGATCATTCTACCAACAGAAGGGATCATCGGTATTGCGTTG
AAAATGTATGTGGTGGAGAGCAAAGGTGGAGCCATAGCATGCATGCTACTTGCGCTCTTCTTCTTGGGCACATGGCCTGCTGTCATGACTCTCCTGGAAA
GACGGGGCCGTCTTCCTCAGCATACTTACCTCGATTATTCAATCACGAATCTCCTGGCTGCTGTAATTATTGCTTTTACATTTGGTGAGATAGGGAAGAG
CACGCATGAGGCACCGAATTTCTTAACCCAGCTTTCTCAATTAAGCGACAATTGGCCTTCTGTTATGTTTGCAATGGCCGGTGGGGTGGTCCTCAGCCTT
GGGAATTTATCCACACAGTATGCCTGGGCTTTTGTTGGTTTGTCGGTGACAGAAGTGATCACTGCTAGCATAACTGTTGTTATAGGCACAACGTTGAATT
ACTTCTTAGATGACAAAATTAATAATGCCAAAATTCTTTTCCCGGGTGTTGGCTGCTTCTTGATTGCTGTCTGCCTTGCTTCAGCTGTTCACTCGTCCAA
TGCAGCTGATAATAGAGCCAAGCTCAGCTGTTTGTCAAACGATGACAAACTTCGATCAGTGGCTACAGACATCTCCACATCCAGAGAAGCTTTTCCAGAA
AAGGAAAGAAGGGCAAAATTTGGAACAGCAGGCTTCCTTGTAGAGCTTGAGAACAGAAGAGCAATCAAGGTGTTTGGGAAGAGTACTTTAATTGGACTGG
CCATAACTTTCTTTGCTGGCATTTGCTTCTCGCTCTTCTCACCAGCTTTTAACTTGGCATCAAACGATCAATGGCACACCTTGAAAAAAGGGGTTCCTAA
GTTGGTTGTCTACACTGCATTTTTCTGGTTCTCGGTCTCTTGTTTTGTACTGGCCATCATTCTGAATGTCACCTTCCTCTATCACCCTGTGCTGGACTTG
CCTAGATCATCATTGAAAGCGTATATTAATGATTGGAATGGCAGAGGCTGGGCGTTTTTAGCTGGTCTCTTGTGTGGGTTTGGGAACGGTCTTCAATTTA
TGGGAGGTCAAGCTGCAGGATACGCAGCAGCAGATGCAGTCCAGGCGCTTCCGCTTGTGAGTACATTTTGGGGCATTCTTCTATTTGGTGAGTACCGGAA
ATCATCGCGAAGAACGTATGTATTTCTTGTCAGCATGTTGCTCATGTTTGTCGCAGCTGTGGCAGTTCTCATGGCATCAGCAGGGCATCGAAAATGA
AA sequence
>Potri.008G095500.5 pacid=42807911 polypeptide=Potri.008G095500.5.p locus=Potri.008G095500 ID=Potri.008G095500.5.v4.1 annot-version=v4.1
MLSKCHFACRFLHALLFYTFFFDFLFPDFLLLTTTTLYRQPDDFFFLKKNRRNHFRFAQYGLLRGTTQNEWLNLFLCLKGFSGIPSSIILPTEGIIGIAL
KMYVVESKGGAIACMLLALFFLGTWPAVMTLLERRGRLPQHTYLDYSITNLLAAVIIAFTFGEIGKSTHEAPNFLTQLSQLSDNWPSVMFAMAGGVVLSL
GNLSTQYAWAFVGLSVTEVITASITVVIGTTLNYFLDDKINNAKILFPGVGCFLIAVCLASAVHSSNAADNRAKLSCLSNDDKLRSVATDISTSREAFPE
KERRAKFGTAGFLVELENRRAIKVFGKSTLIGLAITFFAGICFSLFSPAFNLASNDQWHTLKKGVPKLVVYTAFFWFSVSCFVLAIILNVTFLYHPVLDL
PRSSLKAYINDWNGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYVFLVSMLLMFVAAVAVLMASAGHRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03530 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PE... Potri.008G095500
[exp]
0 1
AT5G38260 Protein kinase superfamily pro... Potri.017G117120
[exp]
6.32 0.9248
AT2G38970 Zinc finger (C3HC4-type RING f... Potri.001G082150
[exp]
10.09 0.9175
AT5G62740 AtHIR4, ATHIR1 hypersensitive induced reactio... Potri.017G078100
[exp]
12.48 0.9067
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Potri.017G151800
[exp]
14.14 0.9183
AT1G11330 S-locus lectin protein kinase ... Potri.001G412100
[exp]
17.20 0.8920
Potri.005G223450
[exp]
17.54 0.9174
AT1G53440 Leucine-rich repeat transmembr... Potri.003G026325
[exp]
19.44 0.9126
AT1G66920 Protein kinase superfamily pro... Potri.017G117285
[exp]
21.44 0.9114
AT2G25410 RING/U-box superfamily protein... Potri.003G080200
[exp]
25.45 0.9078
AT3G62700 ATMRP10, ABCC14 ATP-binding cassette C14, mult... Potri.002G205500
[exp]
29.29 0.8574 MRP4.1

Potri.008G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.