Plant FIBer expression Database

Potri.008G095600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03530 559 / 0 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
AT2G03590 556 / 0 ATUPS1 ureide permease 1 (.1)
AT2G03520 508 / 1e-180 ATUPS4 ureide permease 4 (.1)
AT1G26440 479 / 8e-169 ATUPS5 ureide permease 5 (.1.2.3.4)
AT2G03600 402 / 8e-140 ATUPS3 ureide permease 3 (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G095500
[exp]
595 / 0 AT2G03530 553 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036910
[exp]
582 / 0 AT2G03590 589 / 0.0 ureide permease 1 (.1)
Lus10037075
[exp]
577 / 0 AT2G03530 584 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
Lus10036911
[exp]
553 / 0 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
Lus10037074
[exp]
548 / 0 AT2G03590 575 / 0.0 ureide permease 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF07168 Ureide_permease Ureide permease
Representative CDS sequence
>Potri.008G095600.1 pacid=42808395 polypeptide=Potri.008G095600.1.p locus=Potri.008G095600 ID=Potri.008G095600.1.v4.1 annot-version=v4.1
ATGTATCTAGTGGAGAGCAAAGGAGGAGCTATAGTATGCATGCTGTTTTCCCTGTTCTTCTTGGGTACATGGCCAGCTATTATGACACTACTAGAAAGAA
GAGGCAGGCTTCCTCAACACACATACCTTGATTATTCAATCACAAATCTCTTGGCTGCTGTTATTATAGCTTTGACCTTTGGTGAGATCGGCAGTGGGAG
GCCAAATTTTACGACCCAACTTTCCCAGGATAATTGGCCTTCTATTATGTTTGCAATGGCTGGTGGGGTGGTCCTCAGCCTTGGAAATCTATCCACACAG
TATGCCTGGGCTTTTGTTGGTTTATCAGTGACAGAAGTCATTACTTCCAGCATAACTGTTGTTATAGGAACAACCTTGAATTACTTCCTGGATGACAAAA
TTAACAAGGCAGAGATCCTTTTTCCGGGTGTTGGTTGCTTCCTAATTGCTGTTTGTCTTGGGTCAGCTGTCCATTCATCTAATGCAGCCGACAACAGAGC
AAAGCTCAAGGGTTTAACAAGTGACAACAAAAATGTAACAGAGACTGTAGGTTCTTCCGCATATTCGAATGAAGCATCTCAAAACAAGGGAGTAAAGGAT
ATGGAAAATGGAAGTAGTACTCCAGAGAGAGCCAAAGCTGGAACAGCAGATTTCCTCATAGAGCTTGAGAACAGAAGATCAATCAAGGTGTTTGGAAGGA
GCACTTTGATTGGACTGTCTATAACTTTCTTTGCAGGTTTTTGCTTCTCTCTGTTCTCCCCAGCTTTTAACTTGGCAACAAATGATCAGTGGCACACCTT
GAAGAAAGGGGTTCCTAAGTTGGTTGTCTACACTGCATTTTTCTGGTTTTCGGTCTCTTGTTTTGTACTTGCCATCATTCTAAATGTCACCTTCCTTTAC
CGCCCTGTATTAAATCTACCGAGGTCATCACTTAAGGCTTATGTTAATGACTGGAATGGTAGAGGCTGGGCATTTTTGGCTGGCCTGCTCTGTGGATTTG
GGAATGGTCTCCAATTTATGGGAGGTCAAGCTGCAGGATATGCAGCAGCAGATGCTGTTCAGGCACTCCCACTTGTGAGCACATTTTGGGGCATACTTCT
CTTTGGAGAGTACAGAAAATCATCGCGAAGAACATACATTTTGCTTGTAAATATGTTGTTCATGTTTATTGCAGCTGTTGGGATTCTGATGGCATCGTCA
GGACATCGAAAATGA
AA sequence
>Potri.008G095600.1 pacid=42808395 polypeptide=Potri.008G095600.1.p locus=Potri.008G095600 ID=Potri.008G095600.1.v4.1 annot-version=v4.1
MYLVESKGGAIVCMLFSLFFLGTWPAIMTLLERRGRLPQHTYLDYSITNLLAAVIIALTFGEIGSGRPNFTTQLSQDNWPSIMFAMAGGVVLSLGNLSTQ
YAWAFVGLSVTEVITSSITVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVCLGSAVHSSNAADNRAKLKGLTSDNKNVTETVGSSAYSNEASQNKGVKD
MENGSSTPERAKAGTADFLIELENRRSIKVFGRSTLIGLSITFFAGFCFSLFSPAFNLATNDQWHTLKKGVPKLVVYTAFFWFSVSCFVLAIILNVTFLY
RPVLNLPRSSLKAYVNDWNGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVNMLFMFIAAVGILMASS
GHRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03530 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PE... Potri.008G095600
[exp]
0 1
AT3G54300 ATVAMP727 vesicle-associated membrane pr... Potri.010G239900
[exp]
1.00 0.9663 Pt-VAMP727.2
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.009G011900
[exp]
3.00 0.9588
AT2G17270 PHT3;3 phosphate transporter 3;3 (.1) Potri.004G207200
[exp]
3.46 0.9539
AT2G29100 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, gluta... Potri.004G052600
[exp]
4.89 0.9559
AT5G38710 Methylenetetrahydrofolate redu... Potri.004G106400
[exp]
5.19 0.9461
AT5G09300 Thiamin diphosphate-binding fo... Potri.005G185400
[exp]
5.29 0.9495
AT3G47960 Major facilitator superfamily ... Potri.017G076800
[exp]
5.74 0.9405
AT3G25950 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.008G178800
[exp]
6.48 0.9369
AT4G27020 unknown protein Potri.001G424500
[exp]
8.12 0.9301
AT5G38260 Protein kinase superfamily pro... Potri.007G125450
[exp]
10.95 0.9477

Potri.008G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.