Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13770 624 / 0 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 157 / 3e-42 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT2G31190 123 / 7e-31 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G01510 120 / 2e-29 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT5G49820 110 / 4e-26 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT2G23470 86 / 9e-18 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193300 [exp] 156 / 7e-42 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 132 / 3e-34 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.004G229500 [exp] 100 / 1e-22 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.007G035300 [exp] 90 / 4e-19 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 90 / 4e-19 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 63 / 4e-11 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036909 [exp] 664 / 0 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 603 / 0 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10001047 [exp] 157 / 5e-42 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 155 / 4e-41 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 119 / 2e-29 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10010692 [exp] 115 / 1e-27 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 114 / 3e-27 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10033888 [exp] 105 / 2e-24 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 99 / 5e-22 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10016778 [exp] 97 / 3e-21 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [poplar] [flax] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Potri.008G095700.5 pacid=42806881 polypeptide=Potri.008G095700.5.p locus=Potri.008G095700 ID=Potri.008G095700.5.v4.1 annot-version=v4.1 ATGGAAGAAATAGTATCAGCAAATAAAGAGACTAGATCATCATCATCATCAAAATTTATAATCGAAGAATGGAATGGATCTTCTTCATCAAAACTCTTTA AAACTGCGACTATAACTACTTCTCCTTATCTATCCATCCAGAGATCTGGAAGTCGTTTTAATCACGTCTGGAGACGAGTCCTTCAAGCGTTTGTACCCGA GGGATTTCCAAGCAGTGTAACACCAGATTATGCCCCTTTTCAAGTATGGGATTCATTGCAGGGTCTTTCAACTTACATAAGGACCATGCTTTCAACACAA GCTCTCTTGAGTGCAATTGGGGTTGGTGAGAAATCAGCTACTGTCATTGGTGCCACATTTCAGTGGTTTTTGAGGGACTTAACTGGAATGCTTGGAGGCA TACTCTTTACATTTTACCAGGGCTCAGACCTGGATAGCAATGCCAAGATGTGGCGTTTAGTTGCTGACCTTATGAATGATCTCGGAATGTTGATGGACCT TCTTTCCCCTTTGTTTCCTTCCGCTTTTATTTTTGTTGTTTGCTTAGGAAGCTTATCAAGATCTTTCACTGGTGTTGCTAGTGGTGCAACTAGAGCTGCT TTGACTCAGCATTTCGCCCTTCAGAACAATGCTGCAGATATATCTGCCAAGGAAGGAAGTCAAGAAACAGTCGCAACAATGATTGGCATGGCCTTAGGAA TGATCCTCGCTCGAATAACAATGGGACTCCCCCTAGCCATTTGGTTTTCTTTTCTTTCTCTCACCGTGTTCCATATGTATGCAAACTACAGGGCTGTTGG GTGCCTTGCTTTGACTTCTTTAAATATTGAGAGGAGCGCTATTCTCTTCCAGCATTTCATGGAGACTGGCCAAGTTCTCTCTCCTGAGCAGGTCTCTAGA ATGGAACATGTTTTACCAACATGGATCACTTCTTGGAGTTCAAAAAAGGTCAAGTTACTACATGCCAATGTGCGCTTGGGTGTGAGAGTTTCTTCACTTG ATCACCAGGAAATGAAGGAGGTGTTGCTTTCTGCAGGATCTCATTATCTTAAAGCAAAATACTTGCTGGTGGAGAGGAAGGGAATCATCGATGTTATAAT GCACAAAAATTCAACAGCTTCAGATGTCTTGCAATCGTTTATTCACGCTCTTGTTATGGCCAAACTCATGCAAAAAAGTTCATCTGTCTATTTGGAGAGC CAGTCATGGATGGATAAACATTATGAAGTTTTTCTTCAAAAGCTAAGTTCATTGGGTTGGAAAACAGGGCGCCTTCTTTCCCCTCCAGTCATCTGGAAGG CGAACTGGACAGATGTTTCATCAGATGATAAAATCGACTAG
AA sequence Show only first row Show all	>Potri.008G095700.5 pacid=42806881 polypeptide=Potri.008G095700.5.p locus=Potri.008G095700 ID=Potri.008G095700.5.v4.1 annot-version=v4.1 MEEIVSANKETRSSSSSKFIIEEWNGSSSSKLFKTATITTSPYLSIQRSGSRFNHVWRRVLQAFVPEGFPSSVTPDYAPFQVWDSLQGLSTYIRTMLSTQ ALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGILFTFYQGSDLDSNAKMWRLVADLMNDLGMLMDLLSPLFPSAFIFVVCLGSLSRSFTGVASGATRAA LTQHFALQNNAADISAKEGSQETVATMIGMALGMILARITMGLPLAIWFSFLSLTVFHMYANYRAVGCLALTSLNIERSAILFQHFMETGQVLSPEQVSR MEHVLPTWITSWSSKKVKLLHANVRLGVRVSSLDHQEMKEVLLSAGSHYLKAKYLLVERKGIIDVIMHKNSTASDVLQSFIHALVMAKLMQKSSSVYLES QSWMDKHYEVFLQKLSSLGWKTGRLLSPPVIWKANWTDVSSDDKID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Potri.008G095700 [exp]	0	1
AT5G53850			haloacid dehalogenase-like hyd...		Potri.011G118132 [exp]	3.74	0.6979
					Potri.001G060300 [exp]	17.54	0.6197
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Potri.010G072900 [exp]	17.88	0.6112
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	18.16	0.6816
					Potri.005G156500 [exp]	22.80	0.6955
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.008G132900 [exp]	24.24	0.6310
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Potri.001G035700 [exp]	37.08	0.6242
AT2G20495			unknown protein		Potri.005G225900 [exp]	37.78	0.6529
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	39.24	0.6629
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	54.40	0.6438

Compare expression of checked genes

Potri.008G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.