Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69290 860 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68980 756 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03100 225 / 9e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09650 169 / 5e-44 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17616 106 / 1e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 100 / 9e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 94 / 1e-19 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04810 89 / 7e-18 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G12620 86 / 2e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 86 / 2e-17 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212400 [exp] 230 / 1e-65 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G084400 [exp] 154 / 2e-39 AT4G17616 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G085300 [exp] 136 / 2e-33 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 105 / 3e-23 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G017400 [exp] 96 / 4e-20 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G241300 [exp] 95 / 6e-20 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G105400 [exp] 91 / 8e-19 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 90 / 2e-18 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 89 / 3e-18 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037077 [exp] 926 / 0 AT1G69290 827 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036908 [exp] 391 / 1e-130 AT1G69290 365 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007353 [exp] 216 / 5e-61 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020775 [exp] 212 / 1e-59 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015059 [exp] 152 / 3e-38 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037275 [exp] 135 / 7e-33 AT4G17616 560 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036907 [exp] 108 / 2e-28 AT1G69290 100 / 5e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 96 / 3e-20 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 89 / 3e-18 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023168 [exp] 82 / 2e-17 AT3G09650 314 / 1e-102 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.008G095800.1 pacid=42807375 polypeptide=Potri.008G095800.1.p locus=Potri.008G095800 ID=Potri.008G095800.1.v4.1 annot-version=v4.1 ATGTTGAGAAGAGTGTTCCCTTTGCTTCGACGCCGATCCTTCAGCACCACACCCGAAATCCCAAATTTATACTCTTTCTTGCAACCCACCATCTTTGCCC TTAAAAAGACTCCACCGTCAACCACAAACCCCGCCACCACCACCAACAGACAAACCCCGAAAATCTTAACACAAGATCACATAACCAATCTAGAATCCAC CCTTCACAAGTCCCTCATCACTAACAACACTAATGAGGCATGGGCGTCTTTCAAGTCATTAACCTCAAACTCAGCTTTCCCGTCCAAGTCTCTCACTAAC TCACTCATCACACACCTTTCCTCTCTCAATGACACCATCAATCTCAAAAGGGCATTTGCTTCTATTGTTTACGTTATTGAGAAGAACCCAAAAAGTTTAG ATTTTGAAACGGTACAACTGTTTCTTGGTTCAATGGTACGTGCCAATACTGCTGCTCCTGCTTTTGCTTTAATCAAATGTATGTTTAAGAACAGGTTTTT TATGCCTTTTCGACTGTGGGGTGATATTCTCATTGAAATTAGTAGAAAAAATGATAAAGTTATTGCCTTTTTGAAAGTTTTTGAAGAAAGTTGTAGAATT GCTATTGATGAGAAATTGGATTTTATGAAACCTGATATGGATGCTTGTAATGTGGCTCTAGAAGGGTGTTGTTGCGAACTTGAGTCTGTTAGTGAAGCTG AAAAGGTTATTGAAACTATGTCCGTGCTGGGTATTAAGCCTGATGAATTGAGTTTTGGGTTTCTTGCTTATTTGTATGCACTGAAGGGGTTTCAAGATAA GATAATCGAGTTAAACGGTTTAATGAGTGGCTTTGGTTTTTCGAATAAAAAGTTATTTTTTAGTTATTTGATTAGGGGGTATGTAAAGTCAGGGAGTTTT GAGGCTGTTTCGGAAACTATTCTACGTAGTTTGAGGGAACAAGGTGGACTAGATTTGAATTTTAGCGAGGAAACTTATTGTCAGGTGGTTAAAGGATTTA TGAAAGATGGAGGTATCAAGGGTTTAGCAAACTTGATCATTGAAGCTCAGAAGTTGGAGTCAGCAACTATTGCTGCGGATAAATCAACTGGGTTTGGTAT TATTAGTGCCTGTGTTAATCTTAGATTATCAGATAAGGCGCACAGTATTGTTGATGAAATGGATGCTCAAGGTGGTTCTGTGGGACTTGGGGTCTTTCTG CCAATCTTGAAGGCATACTGCAAAGAGTATAGAACAGCTGAAGCTACACAGCTGGTCATGGATATTAGCAACAAAGGGCTTCAATTAGATGAGGGGAGCT ATGATGCACTAATTGAAGCATCAATGACAAGCCAAGATTTCCAGTCAGCTTTTACTTTGTTTAGGGACATGAGAGAGGGAATAGCTGAATTGAAAGGAAG TTATTTGACAATTATGACAGGTTTAATGGAAAAACAACGTCCTGAACTAATGGCTGCTTTTTTAGATGAAATCGTTGAGGACCCTCGAGTTGAAGTGAAA ACTCATGACTGGAATTCAATTATTCATGCTTTTTGTAAAGCTGGGCGGTTAGAGGATGCGAAGAGGACTTTCAGAAGAATGACTTTCCTACAGTTTGAAC CAAATGACCAAACATATTTGTCCCTAATTAATGGGTATGTGACTGCAGAGAAATATTTTGGTGTTTTGATGCTCTGGAATGAGGTTAAGCGAAAGGTCTC ACCGGATAAAGAGAAGGGTATTAAATTTGATCAAAGTTTGGTTGATGCATTCCTATATGCTATGGTGAAAGGAGGTTTCTTTGATGCAGTGATGCAAGTC GTAGAAAAATCTCAGGAGATGAAGATTTTTGTGGATAAATGGAGGTACAAGCAAGCGTTCATGGAGAGTCATAAGAAGCTGAAAGTATCAAAGTTGAGAA AGAGGAACTTCCGAAAAATGGAAGCACTTATTGCTTTTAAGAATTGGGTGGGTCTAAATACATGA
AA sequence Show only first row Show all	>Potri.008G095800.1 pacid=42807375 polypeptide=Potri.008G095800.1.p locus=Potri.008G095800 ID=Potri.008G095800.1.v4.1 annot-version=v4.1 MLRRVFPLLRRRSFSTTPEIPNLYSFLQPTIFALKKTPPSTTNPATTTNRQTPKILTQDHITNLESTLHKSLITNNTNEAWASFKSLTSNSAFPSKSLTN SLITHLSSLNDTINLKRAFASIVYVIEKNPKSLDFETVQLFLGSMVRANTAAPAFALIKCMFKNRFFMPFRLWGDILIEISRKNDKVIAFLKVFEESCRI AIDEKLDFMKPDMDACNVALEGCCCELESVSEAEKVIETMSVLGIKPDELSFGFLAYLYALKGFQDKIIELNGLMSGFGFSNKKLFFSYLIRGYVKSGSF EAVSETILRSLREQGGLDLNFSEETYCQVVKGFMKDGGIKGLANLIIEAQKLESATIAADKSTGFGIISACVNLRLSDKAHSIVDEMDAQGGSVGLGVFL PILKAYCKEYRTAEATQLVMDISNKGLQLDEGSYDALIEASMTSQDFQSAFTLFRDMREGIAELKGSYLTIMTGLMEKQRPELMAAFLDEIVEDPRVEVK THDWNSIIHAFCKAGRLEDAKRTFRRMTFLQFEPNDQTYLSLINGYVTAEKYFGVLMLWNEVKRKVSPDKEKGIKFDQSLVDAFLYAMVKGGFFDAVMQV VEKSQEMKIFVDKWRYKQAFMESHKKLKVSKLRKRNFRKMEALIAFKNWVGLNT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69290			Pentatricopeptide repeat (PPR)...		Potri.008G095800 [exp]	0	1
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	2.00	0.8931
AT5G15280			Pentatricopeptide repeat (PPR)...		Potri.017G086000 [exp]	2.44	0.8145
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	5.29	0.8720
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	8.48	0.8058
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	10.67	0.8407
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	16.97	0.7894
AT5G50990			Tetratricopeptide repeat (TPR)...		Potri.012G109300 [exp]	18.24	0.7633
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	19.05	0.8015
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	19.18	0.8270
AT3G14120			unknown protein		Potri.001G165900 [exp]	19.20	0.7623

Compare expression of checked genes

Potri.008G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.