Plant FIBer expression Database

Potri.008G096100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61040 107 / 1e-24 unknown protein
AT5G08010 86 / 2e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G057600
[exp]
120 / 1e-28 AT5G61040 309 / 2e-96 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021155
[exp]
137 / 1e-34 AT5G61040 287 / 1e-88 unknown protein
Lus10040520
[exp]
130 / 4e-32 AT5G08010 290 / 2e-89 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G096100.1 pacid=42807544 polypeptide=Potri.008G096100.1.p locus=Potri.008G096100 ID=Potri.008G096100.1.v4.1 annot-version=v4.1
ATGGATTTATGGGTAGTAGCCGTAGCTGCTGGTGCAGGATATGCAGTAAAAGCTAATTACTTCAAGAATTCTTCAGCGAGGTTAAGAGAACGCTCATTTG
AATCCTTTTCTTTGGATTATTTTCACAGCCAATCCCAGTCCTGGAATTTACTGCAACGAATACGGGAGCAAACTTGCCCCTTTTGCAGATTAGGTATCTG
CAAGCATTCAGCAACAGATGAATCATTAGGTAGAGATTTTATAGGGGTTCCAAGTAGTAGTGCTACTAAAGGCGAAATACAGTTACAGAGTCATCGGCCT
TATGGAAGGGGTTACTTTCTTTATTTATCTAGTGAATTGTTGCCTGATTCTATCAAACGAGAAGTGAGTTCGTTTCGAAGGTTAACAGCGGACAGGCAAC
TTGGGAATAGGTCTAGAGGGTATATCAATAAATTCCTTGATTCTTCAGATAGTATCCTCACTCCTGAATTGTATGGAGGAGACATTGGGTTTGAAGAATA
TGAATATGCTTCACTACCATCTTCATCTACAGAAATGGCACAGCCATGGATAATCAGAGGTAGCCATGATTTTGGACAAGAGATGCCGTTAGAGAAAGAA
AAGGGATCGTTGATGCTTACTAGAAAACAGATGCAGTATTTTGATATGGGACAGTCTAGGAGATTTAGCAGGTCAAGTAGAAGGGTAACTGGTGGATTGT
TTTATTCACAAGGGTCTTATGATAGAATGCTTCTTTTCTTCCTGGGGATAACTGTTGGAATAATGTCTCATGTTGCCGCAAATAAAAGAGAAGTGGACTA
CTTAAATGAATTGTTGAAGCAGAATGAGAACTTGGTCCAGGATTTAAACGAGGAGCTTGTTAGTGAGGGTTCAAGCTTCCAGGGAACCACTGAAAAGCCA
AGCAACAGCGCATCAAGTGAAGTTTCCACGAAAAAGGAATCGGACAAGTCTATAAAATTTTACGGCAGAGAGCCAGATGATGAGAAGGCAGCGAACTCTG
AGGCAATGAGTAAAATTGAGGCAGAGCTTGAAGCTGAACTAGAGAGGTTGGAGCTAAACATGAAATCATCTAGTTTAGAGAGAATGCTCGATTTAATTGA
GATGGACCCCAACTTTGAGCTTGATGTTGAGGGAGATCTAAGCCCAGACGAGGGTCATAAGAAACCTGACGAATTATCCGATTCAGACGATGACACAAGT
GGAAGTTCTACTAATCCCATTGATACAGCAAACTATGCCGTATCACCCAAGGAGCTCAGCTTGCGTCTTCATGAGGTAATTCAATCAAGGCTGGTAGTCC
GGATCATGGAACTCGAGGCTGCACTTGAAAATAGCCAGAAGAGGTTATATGCCTTGGAGTCGGATAGCACAAGCCCTAAGATGGACTTGCATGGTGAAGT
AGAATCATCATCTATACAGCAAGCCCCGAGCTTCACTGGTGAAGGCAATGGCGTGCACTGCCAATTTGCTACATCAGGGAAAGCTGATGACTGA
AA sequence
>Potri.008G096100.1 pacid=42807544 polypeptide=Potri.008G096100.1.p locus=Potri.008G096100 ID=Potri.008G096100.1.v4.1 annot-version=v4.1
MDLWVVAVAAGAGYAVKANYFKNSSARLRERSFESFSLDYFHSQSQSWNLLQRIREQTCPFCRLGICKHSATDESLGRDFIGVPSSSATKGEIQLQSHRP
YGRGYFLYLSSELLPDSIKREVSSFRRLTADRQLGNRSRGYINKFLDSSDSILTPELYGGDIGFEEYEYASLPSSSTEMAQPWIIRGSHDFGQEMPLEKE
KGSLMLTRKQMQYFDMGQSRRFSRSSRRVTGGLFYSQGSYDRMLLFFLGITVGIMSHVAANKREVDYLNELLKQNENLVQDLNEELVSEGSSFQGTTEKP
SNSASSEVSTKKESDKSIKFYGREPDDEKAANSEAMSKIEAELEAELERLELNMKSSSLERMLDLIEMDPNFELDVEGDLSPDEGHKKPDELSDSDDDTS
GSSTNPIDTANYAVSPKELSLRLHEVIQSRLVVRIMELEAALENSQKRLYALESDSTSPKMDLHGEVESSSIQQAPSFTGEGNGVHCQFATSGKADD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61040 unknown protein Potri.008G096100
[exp]
0 1
AT3G24800 PRT1 proteolysis 1 (.1) Potri.001G049300
[exp]
7.34 0.9585
AT1G28140 unknown protein Potri.001G100300
[exp]
9.27 0.9677
AT2G46735 unknown protein Potri.002G178100
[exp]
9.48 0.9647
AT1G07650 Leucine-rich repeat transmembr... Potri.004G063600
[exp]
11.09 0.9482
AT1G65260 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PL... Potri.006G123600
[exp]
13.30 0.9666
AT3G46630 Protein of unknown function (D... Potri.014G023400
[exp]
15.42 0.9565
AT5G13510 EMB3136 EMBRYO DEFECTIVE 3136, Ribosom... Potri.010G215900
[exp]
15.62 0.9664
AT5G55830 Concanavalin A-like lectin pro... Potri.015G004500
[exp]
15.81 0.9468
AT1G42550 PMI1 plastid movement impaired1 (.1... Potri.002G006100
[exp]
15.87 0.9575
AT2G37710 RLK receptor lectin kinase (.1) Potri.006G088632
[exp]
15.87 0.9496

Potri.008G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.