Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPK1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 1140 / 0 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 525 / 5e-175 RPK1 receptor-like protein kinase 1 (.1) AT5G63930 419 / 2e-128 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 409 / 1e-123 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 398 / 2e-120 Leucine-rich receptor-like protein kinase family protein (.1) AT1G73080 398 / 2e-120 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT2G33170 396 / 2e-119 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G75820 386 / 4e-117 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 385 / 8e-116 AtPEPR2 PEP1 receptor 2 (.1) AT1G35710 366 / 1e-108 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094400 [exp] 1212 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 1195 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 788 / 0 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.013G051300 [exp] 428 / 1e-131 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G025500 [exp] 425 / 3e-130 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G009300 [exp] 410 / 7e-125 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.008G007600 [exp] 397 / 2e-120 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.005G241500 [exp] 385 / 5e-117 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 383 / 6e-115 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010087 [exp] 889 / 0 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 887 / 0 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 582 / 0 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 575 / 0 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 554 / 0 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 553 / 0 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 501 / 4e-164 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10035126 [exp] 397 / 3e-122 AT3G02130 450 / 4e-142 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10017267 [exp] 379 / 3e-114 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 379 / 3e-114 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G096400.1 pacid=42807315 polypeptide=Potri.008G096400.1.p locus=Potri.008G096400 ID=Potri.008G096400.1.v4.1 annot-version=v4.1 ATGAAATGCAATCTGTTATCAAAAACCCTTCTTCTCTTCTTCTTCTTCTTCTCTCTCTCCTGTTTTCTCTCTCTTGTCTCTGGTGATGAAGCTTTTCCTG ATAAATCTGTTCTGTTGGAATTCAAGTCCGCTGTTTCTGATCCTTATGGGATTCTCTCAAGCTGGAACCCCAACAGCAGCAACAAGACCAAGACCAGTCA CTGTTCATGGTTTGGTGTCACGTGCAACTCCAAATCCAGGGTTATCTCACTGAATATCACTGGTGGGGATGGCTATGGAGGTAATTCTAAAGTTCCTCCT TGTTCAAGGTCTTTGAAGTTTCCTTTTTTTGCCCTTGGGACTAAAAGAACATGTTATAATCATGATGGGAAACTGAAGGGGAAGTTGTCTCCTTCTATTG GAAAACTTAGTGAGCTTACAGTTTTATCATTGCCTTATAATGAGTTTAGTGGGGAAATTCCCATGGAGATATGGGGTTTAGATAAATTACAAGTGCTTGA TCTTGAAGGCAATTTGTTTGCTGGGAAATTGCCAGACGAATTTGCTGGTTTAAAGAAGTTGAGGGTTTTGAATCTTGGTTTTAATAGACTTGATGGGGAG ATTCCAATTTCTCTGTCCAATTCTGTGTCTATGGAGGTTTTGAATTTAGCTGGCAACATGCTGACGGGATCTATTCCCGGGTTTTTTGTTAGTTTTTTGA AGTTGAGGGAGCTTAATCTAGCTAATAATGAGCTAAATGGGACTGTTCCTGGTGGTTTTGGAAGCAATTGTCGGTACCTTGAGCATCTTGATCTGTCTGG GAATTTTCTTGCGGGTCGGATCCCTCTTACTTTGGGAAATTGTCAACAGTTACGGATACTTTTGTTGTTTTCGAATATGTTGACGGGTGTCATTCCTCGC AAGTTCGGTCAGCTGAGGAGGCTTGAAGTTCTTGATGTTTCAAGAAACTTCATTAATGGCGCAGTCCCTGCTGAACTTGGAAATTGTGTTGAGCTGTCAG TTCTTATCCTTTCAAACCTTTTCGAAACACAGCCAGGGGAGAGAAATAAGAGTGGAAAGGTATTAGTTGGATTGTCACGTGTTGCTGGTGTTGAGTATAA TCATTTTGTAGGATCTCTTCCTGCAGAGGTCACAGCCCTTCCAAAGCTGAGAATACTTTGGGCGCCTAGGGCAACTCTGAAAGGGAAGCTTCCAACCAGT TGGGGTGACTGTGAGAGCTTGGAGATGGTGAACTTAGCTCAGAACGGTTTCTATGGACAAATAAAGGGAGCTTTTGAGAGATGCAAGAAGCTGTATCACC TTGATTTGAGCTCAAATAGGTTAAGGGGGGAGCTTGATAGGAATCTTCCAGTTCCTTGTATGACAGTATTTGATGTCAGTCACAACCTCTTATCAGGCCC TATCCCCAGATTTGATTATAACGTGTGTTCCCCCTCCTTGAACTCAGATCTTGTCCAAGTTGACGACCCATTATCAGGATATGTACCATTCTTCACACAT GAAACTCGTGTTGCAAGCCATTTGCCTTTTGCTCCCGCTAGTTTAGCTGTGATTCACAATTTTGGCAGAAACAACTTTACTGGTCAAATCCGTTGGCTCC CAGTTATTCCAGAGAGATATGGGAAGCAGATTGATTATGCCTTTCTTGCTGCTGGGAACACGCTCACCGGATCGTTTCCTGGAAGCTTATTTAGAAAGTG CGGTGAATTAAATGGAATGATTGCTGATGTTAGCAAAAACAAATTATTAGGTCCTATTCCATTGAATATTGGTGCAATGTGCAGATCTCTTAGATTTTTG GATGCCTCTGACAATGAAATTTCAGGGTATATTCCTCCCAGTCTTGGGAATTTGAGATCCCTCATCACCCTTGACTTCAGTGGTAACAGACTGTGGGGTC AAATTCCAGCAAGGCTCTATCGATTGAAGTACTTGAAGCACATTTCCTTGTCTGGCAACAACCTGACTGGTGCCATCCCTTCTGGCTTGGGGAGGTTACG TTCTCTTGAAGTGTTAAATCTTTCTTCAAATTCCCTGTCCGGTGAGATTCCACTGGACATTGTGCTTTTGAAAAACCTAACTGTTCTTTTGCTTGACAAC AACAGTTTCTCAGGACAGATTCCCTCTGGTTTATCTAAGGCAGCATCACTATCTACAGTTAATGTAAATAACCTGTCTGGGCCATTCCCCTTGATTCGTA AAGTGGCAAATTGCGGCAATGCCCCTGGAAATCCATATCCTAACCCATGCCATAGATTCCTCCAATCTGCTCCATCTGATTCGACAGACAGCAATGCTAC TTCTTCACCAGGGTCTAAAGCTGGGTTTAATTCAATTGAGATTGCATCCATAGCATCTGCATCAGCCATTGTTTCTGTTCTTCTAGCTTTGGTTGTTCTC TTCTTTTACACAAGAAAACGGATCCCAATGGCCAGGGTTCAGGTTTCCGAACCCAAGGAAATTACCACATTTGTTGACATTGGTGTTCCATTATTATATG AGAATATTGTACAAGCAACAGGGAATTTCAACTCGATCAATTGCATTGGGAATGGAGGGTTTGGTGCCACTTACAAGGCTGAAATTTCTCCAGGAAGCCT AGTGGCCATAAAGAAGCTTGCTGTTGGAAGGTTTCAAGGTGTTCAACAATTTGATGCTGAGATAAAGGCCCTTGGGAGGGTGAGGCATCCCAATCTTGTT ACTTTGATAGGATACCATGCCAGCGAAACAGAGATGTTCCTCATATATAATTACTTGCCAGGAGGTAATTTGGAAGATTTCATTAAAGAGAGATCGAAAA GGGAGGTTAGTTGGAAGATTCTTCACAAGATTGCTTTGGATGTAGCCCGGGCGCTTTCTTATCTTCATGATCAATGTGCTCCTCGTGTTCTGCACCGTGA TGTCAAGCCCAATAACATATTGCTGGATAATGACTTCAATGCTTATTTGTCCGACTTTGGATTATCTAGGCTTTTGGGGACCTCTGAAACCCATGCAACA ACTGGTGTAGCAGGAACATTTGGATATGTTGCCCCGGAATATGCTATGACCTGTCGTGTCTCCGAGAAGGCTGATGTTTACAGCTATGGTGTGGTGCTAC TTGAGTTGATATCAGATAAGAAACCGTTGGATCCTTCATTTTCTTCACATGAGAATGGTTTTAATATTGTTTCTTGGGCATGCATGCTATTGCGACATGG TCAAGCGAAGGAGGTCTTCACTACAGGACTATGGGATTCTGGTCCGCATGATGATCTGGTAGATATGCTGCACTTGGCCGTCACTTGTACAGTTGACAGC CTCTCAAACAGGCCTACGATGAAGCAAGTTGTTCAACGGTTGAAGAGAATTCAACCCTCCTAG
AA sequence Show only first row Show all	>Potri.008G096400.1 pacid=42807315 polypeptide=Potri.008G096400.1.p locus=Potri.008G096400 ID=Potri.008G096400.1.v4.1 annot-version=v4.1 MKCNLLSKTLLLFFFFFSLSCFLSLVSGDEAFPDKSVLLEFKSAVSDPYGILSSWNPNSSNKTKTSHCSWFGVTCNSKSRVISLNITGGDGYGGNSKVPP CSRSLKFPFFALGTKRTCYNHDGKLKGKLSPSIGKLSELTVLSLPYNEFSGEIPMEIWGLDKLQVLDLEGNLFAGKLPDEFAGLKKLRVLNLGFNRLDGE IPISLSNSVSMEVLNLAGNMLTGSIPGFFVSFLKLRELNLANNELNGTVPGGFGSNCRYLEHLDLSGNFLAGRIPLTLGNCQQLRILLLFSNMLTGVIPR KFGQLRRLEVLDVSRNFINGAVPAELGNCVELSVLILSNLFETQPGERNKSGKVLVGLSRVAGVEYNHFVGSLPAEVTALPKLRILWAPRATLKGKLPTS WGDCESLEMVNLAQNGFYGQIKGAFERCKKLYHLDLSSNRLRGELDRNLPVPCMTVFDVSHNLLSGPIPRFDYNVCSPSLNSDLVQVDDPLSGYVPFFTH ETRVASHLPFAPASLAVIHNFGRNNFTGQIRWLPVIPERYGKQIDYAFLAAGNTLTGSFPGSLFRKCGELNGMIADVSKNKLLGPIPLNIGAMCRSLRFL DASDNEISGYIPPSLGNLRSLITLDFSGNRLWGQIPARLYRLKYLKHISLSGNNLTGAIPSGLGRLRSLEVLNLSSNSLSGEIPLDIVLLKNLTVLLLDN NSFSGQIPSGLSKAASLSTVNVNNLSGPFPLIRKVANCGNAPGNPYPNPCHRFLQSAPSDSTDSNATSSPGSKAGFNSIEIASIASASAIVSVLLALVVL FFYTRKRIPMARVQVSEPKEITTFVDIGVPLLYENIVQATGNFNSINCIGNGGFGATYKAEISPGSLVAIKKLAVGRFQGVQQFDAEIKALGRVRHPNLV TLIGYHASETEMFLIYNYLPGGNLEDFIKERSKREVSWKILHKIALDVARALSYLHDQCAPRVLHRDVKPNNILLDNDFNAYLSDFGLSRLLGTSETHAT TGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELISDKKPLDPSFSSHENGFNIVSWACMLLRHGQAKEVFTTGLWDSGPHDDLVDMLHLAVTCTVDS LSNRPTMKQVVQRLKRIQPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.008G096400 [exp]	0	1	Pt-RPK1.1
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	6.55	0.8536
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	8.77	0.8045
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	8.83	0.8353
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	12.08	0.8356
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	13.11	0.8231	Pt-ALA9.2
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	15.96	0.8193	CNGC.1
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145532 [exp]	17.14	0.8155
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	21.72	0.8070
AT1G75400			RING/U-box superfamily protein...		Potri.002G031600 [exp]	21.90	0.7746
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074400 [exp]	22.44	0.7634

Compare expression of checked genes

Potri.008G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.