Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13740 240 / 6e-77 AFP2 ABI five binding protein 2 (.1) AT1G69260 204 / 4e-63 AFP1 ABI five binding protein (.1) AT3G29575 136 / 3e-38 AFP3 ABI five binding protein 3 (.1.3.4) AT3G02140 100 / 6e-24 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT3G07250 95 / 6e-21 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT4G28910 76 / 5e-15 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157900 [exp] 480 / 3e-171 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 210 / 3e-65 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 186 / 1e-55 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 70 / 6e-13 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 66 / 1e-11 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004645 [exp] 275 / 9e-91 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10036898 [exp] 171 / 4e-51 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10026667 [exp] 165 / 8e-48 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10037084 [exp] 160 / 8e-47 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10022764 [exp] 105 / 1e-25 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10003145 [exp] 105 / 3e-25 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10043236 [exp] 65 / 3e-11 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 64 / 4e-11 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [poplar] [flax] EAR Ethylene-responsive binding factor-associated repression PF16136 [poplar] [flax] NINJA_B Putative nuclear localisation signal
Representative CDS sequence Show only first row Show all	>Potri.008G096500.1 pacid=42807166 polypeptide=Potri.008G096500.1.p locus=Potri.008G096500 ID=Potri.008G096500.1.v4.1 annot-version=v4.1 ATGGGAGAAACAAACGAGAATAGAAATAGGAGCAGCAGCAGCAGCAGAAGTAGCAGAGTAATGGAGAGTCTTTCTTTGGATATTAACAGGTACCCAAGAG ATCTATTACAAAGATTCATGTCAAGTGACGCGCAGCAATATCAAACAGCAACAAGTGATGGAGAAGAAACAGAGGAGATTGAATTAAATCTTGGGCTATC ACTTGGTGGAAGATTTGGGGTTGATAAGTCTTCAAAGAAACTAACGAGATCTTCATCAATAGCTGGTTCAATACCATTGTTGAGAGACTATGATGCTTTA ACCACTCCACCTGCACCTTATCCTCTTCTCATGAGGACTTCTTCTTTGCCTACGGAGACAGAGGAGGAGTGGAGGAAGCGGAAGGAAATGCAGAGTTTGA GGAGAATGGAAGCCAAGAGAAGGCGAAGTGAAAAGCAAAGGAATTTGAGAGGAGAGTTGAGTCTGGAGGAAGTCAAATTGAATAAAGGGAATTGGGTGCC GACGTGGGCTAGTAAGCAGAGTGGTGTTGTGAATAGAGGTAATAATCTGGCAGGGCAGCAGCAGCAGCAGCAGCAAGCGTCACAAGGGTCCGTGGAGTCT CAAGGAGGGAGCTCTTCTGGATTATCAGAAATGGTGAGCAAGCCTGTTCAAGGATCAAGCAGTGGTGGTGAAGCACGAAGTCCCACAAGTAACCAGTCTT TGCAGGAACGAGGCAGTCAAGAAGATTTAGATTCTTCTGGGACAAAGAAAAATGAAAATGCGTGCAGAGCCTCCAGTACAGAAATGGAGAATTTTTCCAA GAAGCTTGATTCTGCAGAAAATATAGGGAGGGAAATTGGGACCAATGCAATGGAAGATATGCCTTGTGTGTTTACAAAAGGAGATGGTCCTAATGGGAGA AGAGTGGATGGCATCCTGTACAAGTACGGCAAGGGAGAGGAAGTAAGGATCATGTGCGTCTGCCATGGCAGCTTTCTATCCCCCGCAGAGTTCGTGAAGC ATGCAGGTGGCAGTGATGTTAATCACCCTCTTAGACACATAGTGATAAACTCTTCTGGTCCGTCCTTTGTGTAA
AA sequence Show only first row Show all	>Potri.008G096500.1 pacid=42807166 polypeptide=Potri.008G096500.1.p locus=Potri.008G096500 ID=Potri.008G096500.1.v4.1 annot-version=v4.1 MGETNENRNRSSSSSRSSRVMESLSLDINRYPRDLLQRFMSSDAQQYQTATSDGEETEEIELNLGLSLGGRFGVDKSSKKLTRSSSIAGSIPLLRDYDAL TTPPAPYPLLMRTSSLPTETEEEWRKRKEMQSLRRMEAKRRRSEKQRNLRGELSLEEVKLNKGNWVPTWASKQSGVVNRGNNLAGQQQQQQQASQGSVES QGGSSSGLSEMVSKPVQGSSSGGEARSPTSNQSLQERGSQEDLDSSGTKKNENACRASSTEMENFSKKLDSAENIGREIGTNAMEDMPCVFTKGDGPNGR RVDGILYKYGKGEEVRIMCVCHGSFLSPAEFVKHAGGSDVNHPLRHIVINSSGPSFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.008G096500 [exp]	0	1
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.010G224800 [exp]	5.74	0.6888
					Potri.010G002600 [exp]	13.03	0.6605
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	16.88	0.6276
AT4G38520			Protein phosphatase 2C family ...		Potri.004G177100 [exp]	26.19	0.6155
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Potri.016G002700 [exp]	35.49	0.6100
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147400 [exp]	42.60	0.5365
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G173901 [exp]	46.90	0.6084
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	47.01	0.6008
AT5G07330			unknown protein		Potri.015G109100 [exp]	48.49	0.5701
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	52.00	0.5887

Compare expression of checked genes

Potri.008G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.