Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03640 218 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT1G13730 213 / 4e-64 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT5G60980 206 / 2e-61 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G25150 195 / 7e-57 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G69250 191 / 1e-55 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 159 / 1e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT5G43960 130 / 4e-33 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G07250 100 / 4e-22 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G55540 75 / 1e-14 nuclear transport factor 2 (NTF2) family protein (.1) AT1G22760 54 / 2e-07 PAB3 poly(A) binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157800 [exp] 646 / 0 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.017G094600 [exp] 241 / 2e-74 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.015G058700 [exp] 228 / 2e-69 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 151 / 3e-40 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G257000 [exp] 147 / 4e-39 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G065500 [exp] 141 / 4e-37 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 138 / 8e-36 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.011G025500 [exp] 62 / 3e-11 AT1G11570 171 / 5e-56 NTF2-like (.1.2) Potri.003G170800 [exp] 59 / 1e-10 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026668 [exp] 322 / 2e-105 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10036918 [exp] 320 / 8e-105 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10037066 [exp] 311 / 2e-101 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10004644 [exp] 297 / 4e-96 AT2G03640 253 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10025906 [exp] 207 / 2e-59 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022765 [exp] 198 / 7e-58 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 197 / 2e-57 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022873 [exp] 149 / 7e-40 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10023722 [exp] 137 / 4e-35 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 120 / 7e-30 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [poplar] [flax] NTF2 PF02136 [poplar] [flax] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Potri.008G096700.1 pacid=42808675 polypeptide=Potri.008G096700.1.p locus=Potri.008G096700 ID=Potri.008G096700.1.v4.1 annot-version=v4.1 ATGGCAACACAGGTGGATGAATCTACCGTCAAACTTAACCCAAAAGTGGTGGGGAATGCCTTTGCAGAGCAATACTACAACACCTTATCCAAGTCTCCAG AGCTGCTTCATAACTTCTACAATGATTTGAGCCTGATCAGCAGGCCAGGCTTGGATGGTTCAGTGTCTTCTGCTTCAACTTTAGAAGAAATTAAAAAATT GATACTTTCTCTTGACTATAAGAATTGTGTAGTGGAGATACAGACTGTTGATTCTCAAGAATCTTATGAGAATGCGGTGATGGTGATAGTTACTGGTTTC TTTGCTGGAAAGGACAGTGATAGAAAAAGATTTACGCAAGCATTCTTCTTGGTCCCACAAGATGATGGGACGACATACTTTGTTCTGAATGATATTTTTA GATATGTGGAAGAATCAGAGAATAAGAAAATTAGTGATGCAGACAATATTGCTCCACCTACACCTGTTACCCCATCCCCTGAGCCACCTTCTGTTCCTGA TCACACTGTCGCTGTCAATGTATCAACCAATTTGGAGGAGGGTGGGGTTCAAGCTAAAGAATCTGGCCATCCCTTGGACAATGGGGAGATTCCCATTTCT GAGAAAGATATTGTTGTTGAGAAAGAGGTCGTTGCCACTCAGAATGATGCGCACCCAGTTTCTGAGGCAGTTGCTTCTAGTGTGCAGGAGGATGCTCCCA AGAAGTCTTATGCATCAGTTGTAAATGCATTGAATCTCAAAACACAACCATTTCAACAAAGGGTTTCAGATGTGAAACCTGTGAAACAGTCATATACAGC TGTACCACCCATGGCTTCTTCTCATCAAACAGGTTCTCCTCGCCCACCCGGCAACAATACTGTGGAAATCAACAACAACAGTACTGCAGTTGAGGGTTAC TCCATCTTTGTTGCAAATTTGCCTATGGATGCCACTGTTGACGAGCTTATACAGACTTTCTCAAAATTTGGGGCTATAAAACCTAATGGTGTGCAAGTCA GAAGTTATAAGCAAGATAAGAACTGTTTTGGCTTCGTGGAATTTGAATCAGCTAATTCTGTGGAGAAGGCCCTTGAGGTCTCTACTGTGACGATAGGCAC TCGAACAGCACATATTGAGAGAAAGAATGCCAAAACTGATGGTGAAAGGTACCCTGTAAGAAAGGGTGGTTTTAGGAACGACAATTTTAGGAACCGTGGA AACTTTGGTGGAGGCCGTGGCTATGGCAGAAATGACTTTGAGAATCAGGGTGGAGTCTCAGGTCAAGCTCGGGGCACCACCGGACACAATGGAGAAGCTA ACAAGAAAGTTTATCAGAATGGGTGGGCTAGAGGTCCCCGTCAAGCTCAAGCTGGGAGGAACTAG
AA sequence Show only first row Show all	>Potri.008G096700.1 pacid=42808675 polypeptide=Potri.008G096700.1.p locus=Potri.008G096700 ID=Potri.008G096700.1.v4.1 annot-version=v4.1 MATQVDESTVKLNPKVVGNAFAEQYYNTLSKSPELLHNFYNDLSLISRPGLDGSVSSASTLEEIKKLILSLDYKNCVVEIQTVDSQESYENAVMVIVTGF FAGKDSDRKRFTQAFFLVPQDDGTTYFVLNDIFRYVEESENKKISDADNIAPPTPVTPSPEPPSVPDHTVAVNVSTNLEEGGVQAKESGHPLDNGEIPIS EKDIVVEKEVVATQNDAHPVSEAVASSVQEDAPKKSYASVVNALNLKTQPFQQRVSDVKPVKQSYTAVPPMASSHQTGSPRPPGNNTVEINNNSTAVEGY SIFVANLPMDATVDELIQTFSKFGAIKPNGVQVRSYKQDKNCFGFVEFESANSVEKALEVSTVTIGTRTAHIERKNAKTDGERYPVRKGGFRNDNFRNRG NFGGGRGYGRNDFENQGGVSGQARGTTGHNGEANKKVYQNGWARGPRQAQAGRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03640			Nuclear transport factor 2 (NT...		Potri.008G096700 [exp]	0	1
AT5G25265			unknown protein		Potri.018G023100 [exp]	1.73	0.7654
AT3G60450			Phosphoglycerate mutase family...		Potri.002G141000 [exp]	1.73	0.7421
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.007G129700 [exp]	5.65	0.7356
AT5G54920			unknown protein		Potri.001G423200 [exp]	11.40	0.7164
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	12.96	0.6846	UXS2.2
AT3G13930			Dihydrolipoamide acetyltransfe...		Potri.001G198000 [exp]	14.28	0.6641
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Potri.015G048000 [exp]	20.78	0.6196
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	23.36	0.6429
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.012G075500 [exp]	23.45	0.7278
AT5G26330			Cupredoxin superfamily protein...		Potri.002G156401 [exp]	24.00	0.7070

Compare expression of checked genes

Potri.008G096700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.