Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26370 1020 / 0 RID1 RNA helicase family protein (.1) AT3G26560 601 / 0 ATP-dependent RNA helicase, putative (.1) AT1G32490 600 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 595 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT2G47250 554 / 0 RNA helicase family protein (.1) AT3G62310 546 / 0 RNA helicase family protein (.1) AT4G18465 545 / 0 RNA helicase family protein (.1) AT5G13010 518 / 8e-169 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT1G27900 449 / 4e-148 RNA helicase family protein (.1) AT4G16680 439 / 4e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024400 [exp] 602 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 590 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.012G034200 [exp] 590 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.004G052700 [exp] 544 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 543 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 533 / 2e-180 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 531 / 3e-173 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.010G057200 [exp] 433 / 3e-142 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 325 / 2e-95 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037067 [exp] 1065 / 0 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10036917 [exp] 721 / 0 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10036783 [exp] 603 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 569 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 523 / 3e-176 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10037145 [exp] 523 / 4e-172 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10025127 [exp] 495 / 3e-166 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10033690 [exp] 506 / 3e-163 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10015812 [exp] 451 / 4e-149 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 446 / 4e-147 AT1G27900 1089 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.008G096800.1 pacid=42808186 polypeptide=Potri.008G096800.1.p locus=Potri.008G096800 ID=Potri.008G096800.1.v4.1 annot-version=v4.1 ATGCCTTCAATGGAGCAGAATGGTCCCAGAAACACAACACAAACTCGAAAACAAAAACCAGTCCTCAAGCTCTCCAATCAACCTCGCTGCGCCGCCGATG CTATTTCCAGGAGGGAAATAGTTAAAAAACAGAGAGAGTCTCTACCAATTGCTTCAGTTAAGGAACGACTTGTCCAGGAGGTTAAAAACCATGACGTTTT AATCATCGTTGGTGAAACCGGAAGCGGAAAAACAACTCAGTTGCCTCAGTTTCTATTTAATGCTGGGTTCTGTTCCAATGGAAAAGTTATTGGGATAACA CAACCTAGGCGTGTGGCGGCTATCACGGTTGCTAAAAGAGTTGCAGAGGAATGTGGTGTTGAGTTGGGTCTAAAGGTTGGATATTCCATCAGATTTGATG ATAAGACTTCCAGCTCAACAAGGATCAAGTACATGACCGATGGATTGTTGCTGAGGGAAGCATTATTGGATCCATATCTCTCTAGGTATTCAGTAATAAT TGTTGATGAAGCTCACGAGAGAACTGTCCACACCGATGTGTTACTGGGCTTGCTGAAAAATGTGCAGAGAGCAAGGTTGAAATCTGTCATTGACCATGCT GTTGTCAGTAATAAGAAGGCCAGCAATGGTATAACGAAGGAGAATGAAAAAGGAGCCGAATGCACCAATTTTCTCAAGCAGTGCCAAAGGAAATTTCCAC CATTGAAGTTAATAATCATGTCTGCCAGTTTGGATGCGCGTCTTTTCTCAGAGTACTTTGGTGGTGCCAGAGCTGTTCATGTTGAAGGCCGTCAGCATCA TGTGGATATATTTTATACACTTCACGCGGAGACAGATTATGTAGATGCAGCCTTGATTACCATATTCCAGATCCACTTGGAGGAGGGCCCAGGTGATATT CTTGTGTTCCTAACTGGGCAAGAAGAGATTGAAGGTGTTGAGAGACTTGTACAGGAGCAACTTCAAAAGTTACCAGAAGAAAGTCGAAAGTTGGTAACTG CTCCAATATTTTCATCTCTTCCATCAGAACAGCAAATGCGAGTTTTCATGCCAGCTCCAGCTGGACATCGTAAGGTGATATTGGCAACAAATATTGCTGA GACGTCAGTGACTATACCTGGAATCAAATATGTTATAGATCCTGGATTCATAAAAGCACGTTCTTACGATCCGGTCAAAGGGATGGAATCATTGATAATT ATTCCAACATCGAAAGCCCAGGCTCTTCAAAGGAGTGGACGTGCAGGCCGTGAAGGACCAGGGAAGTGCTTTCGACTCTACCCAGAGAGTGAATTTGAGA AGCTTGAGGATTCAACAAAGCCAGAGATCAAACGGTGCAACCTCTCTAATGTTATTTTGCAGCTCAAGGCTCTAGGCGTTGATGATATTATAGGATTTGA TTTCCTGGAAAAACCATCAAGGGCAGCTATTCAAAAATCGTTGGAGGAGCTGTTTCTGCTGGGTGCTTTGACAGATGACTGTAAGTTGTCGGATCCTGTT GGGCATCAAATGGCTCGGCTTCCCTTAGACCCTATTTATTCCAAAGCTCTCATCCTTGCTAGTCAGTTCAACTGCTTGGAAGAAATGTTGATAGCTGTTT CAATGCTCTCTGTGGAATCTATTTTTTATAATCCTCGTGAGAAGTCAGAAGAGGCAAAAACTGCAAAGAAGTGTTTTGCAAGTCCAGATGGTGACCACCT TACTTTGATTAATGTTTATCGCGCTGCTGATGAACTCTTACAGAAGAGAAGGATGGAGCTTGGTATAGAAAAAAATGAGAAAAATATTAAAGGAAAAAAT GAAAAGATACTGAGAAAATGGTGCAGGGAAAATTTTATTAATAGTCGCTCACTGAGGCATGCTTGTGACATTCACAGTCAGATTAGAGGACATGTTGAAC AGATGGGTCTTCCTATTTCTTCTTGTGGAGATGACACTCTTCAATTCCGTAGATGCCTTGCTGCTTCATTTTTCCTTAATGCAGCTTTGAAGCAACCCGA GGGAACATACAGGGCTTTAGCAAGTGGTCAAGTAGTGCAGATCCACCCTACTTCTGTGTTGCACCAGTCAAAGGTGGAGTGTGTAATTTTTGATGAACTA GTCCAAACAAGTCAGAAGTACATTCGCAACACAACTAGAATTGATTATTTGTGGTTGACTGAGCTTGCTCCTCACTATTATGCAATGCAGGGTTGA
AA sequence Show only first row Show all	>Potri.008G096800.1 pacid=42808186 polypeptide=Potri.008G096800.1.p locus=Potri.008G096800 ID=Potri.008G096800.1.v4.1 annot-version=v4.1 MPSMEQNGPRNTTQTRKQKPVLKLSNQPRCAADAISRREIVKKQRESLPIASVKERLVQEVKNHDVLIIVGETGSGKTTQLPQFLFNAGFCSNGKVIGIT QPRRVAAITVAKRVAEECGVELGLKVGYSIRFDDKTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKNVQRARLKSVIDHA VVSNKKASNGITKENEKGAECTNFLKQCQRKFPPLKLIIMSASLDARLFSEYFGGARAVHVEGRQHHVDIFYTLHAETDYVDAALITIFQIHLEEGPGDI LVFLTGQEEIEGVERLVQEQLQKLPEESRKLVTAPIFSSLPSEQQMRVFMPAPAGHRKVILATNIAETSVTIPGIKYVIDPGFIKARSYDPVKGMESLII IPTSKAQALQRSGRAGREGPGKCFRLYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRAAIQKSLEELFLLGALTDDCKLSDPV GHQMARLPLDPIYSKALILASQFNCLEEMLIAVSMLSVESIFYNPREKSEEAKTAKKCFASPDGDHLTLINVYRAADELLQKRRMELGIEKNEKNIKGKN EKILRKWCRENFINSRSLRHACDIHSQIRGHVEQMGLPISSCGDDTLQFRRCLAASFFLNAALKQPEGTYRALASGQVVQIHPTSVLHQSKVECVIFDEL VQTSQKYIRNTTRIDYLWLTELAPHYYAMQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	0	1
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.016G031900 [exp]	1.73	0.8414
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	2.44	0.8244
AT1G28210		ATJ1	DNAJ heat shock family protein...		Potri.005G160200 [exp]	3.60	0.8628
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	5.00	0.8323
AT5G61820			unknown protein		Potri.012G110600 [exp]	8.00	0.7658
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.006G185200 [exp]	8.24	0.7892	UBP23.3
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	8.48	0.8195
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	10.48	0.8048
AT5G66960			Prolyl oligopeptidase family p...		Potri.007G035900 [exp]	11.61	0.8139
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	11.83	0.8220

Compare expression of checked genes

Potri.008G096800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.