Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26360 379 / 3e-129 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT3G29770 372 / 1e-127 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G69240 373 / 3e-127 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT4G09900 292 / 1e-96 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G33990 291 / 2e-96 ATMES14 methyl esterase 14 (.1) AT5G58310 166 / 9e-49 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT4G16690 159 / 3e-46 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT3G10870 159 / 4e-46 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT2G23560 155 / 8e-45 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23610 150 / 9e-43 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116500 [exp] 402 / 1e-139 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.017G096900 [exp] 400 / 1e-138 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.019G077400 [exp] 306 / 4e-102 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.013G104700 [exp] 303 / 3e-101 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.009G107200 [exp] 171 / 1e-50 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107500 [exp] 171 / 1e-50 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 169 / 4e-50 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 170 / 1e-49 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.019G131100 [exp] 164 / 2e-48 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030707 [exp] 385 / 2e-132 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10013193 [exp] 378 / 1e-129 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 365 / 1e-124 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 347 / 2e-113 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10005298 [exp] 301 / 2e-100 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10003511 [exp] 301 / 3e-100 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 265 / 2e-87 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10015532 [exp] 174 / 6e-52 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 168 / 1e-49 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10029011 [exp] 168 / 2e-49 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G096900.1 pacid=42808796 polypeptide=Potri.008G096900.1.p locus=Potri.008G096900 ID=Potri.008G096900.1.v4.1 annot-version=v4.1 ATGGGAAATGCATTAGGATGCATCTCAACGGAAGGGGCGAGAGAAAAAACCTCTAAACATGAGTTAAACCTTCCACCTTTGCTAGCCTCTTTCAAAGGAA GAGCTGGCCCCCTGTCTTCACTCTCTTCTTCAGAGAATAAAAAGAAGAAGGCAGTGAGCTTTGATGGCCAGCTTGACGAGCAAGCTCTTGCTGCAGCTTT GCTCTTTAACCATCATCAAAGAAATAATGGTAATTCTCTTCCATTTCCTAGATCCCAATCTGCAGTATATCCTTCTTCAGGTTCCAAGAAGCATGGTCTT ACAAGGAGTTCAAGTTCTAGGCCACGGTCTCATTCCGAATCTCTGTTAACAAGACCTGACCAGCTTGTTAACCAGGATCTTGAAACGAACCGTGTTGTTC TCGTTCATGGAGGTGGTTTTGGTGCATGGTGTTGGTATAAAACTATTTCCCTTCTAGAGGAAGCTGGCTTTAAAGCTGATGCAGTGGACTTAACAGGCTC TGGCATCCATTATTCTGATACAAACGGCATTAGAAATCTTGCCGAATATGTAAAGCCACTTTCTGATATTTTTTACAAGCTTGGTGAAGGAGACAAGGTG ATTTTGGTGGGTCATGATCTTGGGGGTGCTTGTATTTCATATGTGATGGAGCTGTTTCCATCTAAAATTGCTAAAGCTGTTTTCATTGCTGCAACAATGC TGTCTAGTGGGCAGAGTGCCCTTGATATATTTTCTCAACAGGCAGGTTTCAGTGACCTGATAAGACAACCTCAGACATTTATCTATGCCAATGGAAAGGA TAACCCTCCGACCGCTATTGTCATTGACAAAACATTGTTAAGAGACTCGTGGTTCAACCAGAGTTCCACCAAGGATGTAGCATTAGCATCAGTATCGATG AGGCCAATCCCATTTGCACCGGTTGTAGAGAAGCTCTTTCTTTCAAGCAACAACTACGGCTCCATTCAAAGGTTTTACATTAAAACTCGAGGAGATTGTG CCCTGCATGTTCCTCTACAGGAGTCTATGATAAAATCAAATCCACCAACACAAGTTTTCGAGCTTAAGGGCTCTGATCATGCACCATTTTTTTCGAAGCC CCAGGCGCTGCATAGGATACTAATCAAGATATCACAAGTTCCATCAAAGGATATCTAA
AA sequence Show only first row Show all	>Potri.008G096900.1 pacid=42808796 polypeptide=Potri.008G096900.1.p locus=Potri.008G096900 ID=Potri.008G096900.1.v4.1 annot-version=v4.1 MGNALGCISTEGAREKTSKHELNLPPLLASFKGRAGPLSSLSSSENKKKKAVSFDGQLDEQALAAALLFNHHQRNNGNSLPFPRSQSAVYPSSGSKKHGL TRSSSSRPRSHSESLLTRPDQLVNQDLETNRVVLVHGGGFGAWCWYKTISLLEEAGFKADAVDLTGSGIHYSDTNGIRNLAEYVKPLSDIFYKLGEGDKV ILVGHDLGGACISYVMELFPSKIAKAVFIAATMLSSGQSALDIFSQQAGFSDLIRQPQTFIYANGKDNPPTAIVIDKTLLRDSWFNQSSTKDVALASVSM RPIPFAPVVEKLFLSSNNYGSIQRFYIKTRGDCALHVPLQESMIKSNPPTQVFELKGSDHAPFFSKPQALHRILIKISQVPSKDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26360		ATMES13, SP1L1	ARABIDOPSIS THALIANA METHYL ES...		Potri.008G096900 [exp]	0	1
AT2G25870			haloacid dehalogenase-like hyd...		Potri.006G235301 [exp]	4.89	0.9199
AT5G05800			unknown protein		Potri.017G062600 [exp]	6.78	0.9066
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.010G101900 [exp]	18.73	0.9282
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.002G227800 [exp]	29.73	0.9232
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.007G068200 [exp]	35.98	0.9215
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G158900 [exp]	42.95	0.9146
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G156038 [exp]	45.27	0.9145
					Potri.013G111566 [exp]	45.54	0.8991
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.010G129101 [exp]	58.78	0.9096
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.002G028400 [exp]	63.28	0.9106	Pt-APETALA3.1

Compare expression of checked genes

Potri.008G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.