Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03690 368 / 8e-131 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157500 [exp] 417 / 2e-150 AT2G03690 367 / 2e-130 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026673 [exp] 382 / 2e-136 AT2G03690 403 / 1e-144 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1) Lus10026671 [exp] 382 / 3e-136 AT2G03690 397 / 2e-142 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05019 [poplar] [flax] Coq4 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Representative CDS sequence Show only first row Show all	>Potri.008G097100.1 pacid=42807985 polypeptide=Potri.008G097100.1.p locus=Potri.008G097100 ID=Potri.008G097100.1.v4.1 annot-version=v4.1 ATGATAGGAGGAGGTAAAATCCGGCTGAATAGGTGGCAACAGGCGGCGGTTGCGGTTGGTTCCGCTGTGGGTTCGTTGTTAGATCCACGAAGGGCGGATT TGATAGCGGCGCTTGGAGAAACAACTGGAAAACCTGCTTTTGAAAGAGTTGTTGAGAGAATGAAAAAGAGCCCTGAAGGAAGAGCAGTTCTCTTGGAGAG ACCTCGTGTCATATCTGCTCAAGTGGGGCATGCATGGGATTTGCCAGCTAATACATTTGGTGCTGCCTATGCAAGATTCATGGGATCCAGGAACTTTTCC CCAGATGACCGTCCACCAGTGCGATTCATGGAAACGGAAGAGCTGGCATATGTTGCAATGCGAGCCCGTGAGGTGCATGATTTCTGGCACACCCTTTTTG GCCTGCCCACTAACTTAATCGGCGAGTCAGCGCTCAAGGTGATTGAATTCGAGCAAATGTACCTTCCAATGTGCCTGATGTCTGTTGTGGGAGGCACGGT TAGATTTACGGAGAAGCAGAGGAAATTGTTCTTCCAGCATTACTTCCCATGGGCCATTCGAGCTGGTATGCAGAGCACAGATCTCATGTGTGTGTATTAT GAGAAGCACTTTCAAGAGGATTTGGAGGATGTCCGCAGAAAATGGGGTATAACTCCCGCTCCTGCTGCCCCGAACCAAAATGTGCCTTGA
AA sequence Show only first row Show all	>Potri.008G097100.1 pacid=42807985 polypeptide=Potri.008G097100.1.p locus=Potri.008G097100 ID=Potri.008G097100.1.v4.1 annot-version=v4.1 MIGGGKIRLNRWQQAAVAVGSAVGSLLDPRRADLIAALGETTGKPAFERVVERMKKSPEGRAVLLERPRVISAQVGHAWDLPANTFGAAYARFMGSRNFS PDDRPPVRFMETEELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFEQMYLPMCLMSVVGGTVRFTEKQRKLFFQHYFPWAIRAGMQSTDLMCVYY EKHFQEDLEDVRRKWGITPAPAAPNQNVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.008G097100 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.015G126301 [exp]	5.56	0.8667
AT3G15430			Regulator of chromosome conden...		Potri.011G121900 [exp]	6.92	0.8421
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.001G001500 [exp]	15.03	0.7749
AT1G79990			structural molecules (.1.2.3.4...		Potri.003G056100 [exp]	15.42	0.8584
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.001G138500 [exp]	15.42	0.8383	Pt-SYP23.2
					Potri.013G156300 [exp]	16.12	0.8507
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.013G046100 [exp]	24.79	0.8246	Pt-PPCK2.1
AT3G48140			B12D protein (.1)		Potri.012G074900 [exp]	25.45	0.8311
AT2G39450		ATMTP11	Cation efflux family protein (...		Potri.010G211300 [exp]	26.73	0.7936	PtrMTP11.1
					Potri.003G074051 [exp]	26.83	0.8348

Compare expression of checked genes

Potri.008G097100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.