Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13700 386 / 6e-136 PGL1 6-phosphogluconolactonase 1 (.1) AT5G24400 255 / 1e-83 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 221 / 3e-71 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24420 214 / 3e-68 PGL5 6-phosphogluconolactonase 5 (.1) AT5G24410 202 / 9e-64 PGL4 6-phosphogluconolactonase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157200 [exp] 499 / 0 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Potri.012G024400 [exp] 280 / 3e-93 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007200 [exp] 275 / 3e-91 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007300 [exp] 252 / 3e-83 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G020100 [exp] 164 / 3e-49 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G008401 [exp] 54 / 1e-09 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037065 [exp] 437 / 6e-156 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10036919 [exp] 432 / 5e-154 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10022352 [exp] 265 / 3e-87 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01182 [poplar] [flax] Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence Show only first row Show all	>Potri.008G097200.1 pacid=42806386 polypeptide=Potri.008G097200.1.p locus=Potri.008G097200 ID=Potri.008G097200.1.v4.1 annot-version=v4.1 ATGTGTAATGGGAACAGAGGAGAGGATCTAGCATTTGAGAGATTTTCTCTTCTATTTATTTACAAAAGAGACAGAATTTCCTCAGTTTCCCTGTCTATTT TTATCCGTTTACTTTTGTGTTTGTGTTTTGTCACGATCATTGGATGCACGTGGAAACCCAGAAGGATGGCTCATTCTGGGGTTCATAAAGATAGAGGGGA GTTGAGGATTCATGAGAATTTGGACGAGCTTGGCACTGATTTGGCAGAATATATTGCTGAATTATCAGAGGCATCGGTGAAGGAGAGGGGTGTCTTTGCC ATTGCCATATCTGGTGGTTCTCTCATTGGCTTGATGGGGAAACTTTGTGAAGCTCCTTATAACAAGACTGTAGACTGGGCTAAATGGTATATATTTTGGG CGGATGAACGGGTGGTAGCCAAAACTCATGCTGATAGCAATTATAAGCTGGCAAAGGATGGTCTTTTGTCCAAGGTACCTGTTGTACCCAGTCATGTGAA TTCTATCAATGATTCAGTGTCAGCAGAGGAGGCTGCTGACGACTATGAATTTCATGTTCGACAGTTAGTGAAAACACGAACAATTAATGTGTCTGATATT AGTGACTGCCCCAAGTTTGACCTCATCCTTCTTGGAATGGGCTCTGATGGTCATGTTGCCTCACTATTCCCTAACCACCCTGTGCTTGACGAGAAAGATG AGTGGGTTACTTTTATTACTGACTCCCCCAAATCCCCACCGGAGAGGATCACCTTCACTTTGCCTGTCATCAACTCAGCATCCAATGTGGTCGTGGTCGT GACAGGCGAGAGCAAAGCAGAGGCTGTACACTTGGCAATTGATGACGCAGGAGCTGACTGCCTGTCATTGCCTGCACGGTTGGTCCAGCCAACAAAAGGG AAGTTGGCGTGGTTTTTGGACAAGCTGGCTGCCTCAAAACTTGACGGTTCTCAGTTTTCTGAGTAG
AA sequence Show only first row Show all	>Potri.008G097200.1 pacid=42806386 polypeptide=Potri.008G097200.1.p locus=Potri.008G097200 ID=Potri.008G097200.1.v4.1 annot-version=v4.1 MCNGNRGEDLAFERFSLLFIYKRDRISSVSLSIFIRLLLCLCFVTIIGCTWKPRRMAHSGVHKDRGELRIHENLDELGTDLAEYIAELSEASVKERGVFA IAISGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKTHADSNYKLAKDGLLSKVPVVPSHVNSINDSVSAEEAADDYEFHVRQLVKTRTINVSDI SDCPKFDLILLGMGSDGHVASLFPNHPVLDEKDEWVTFITDSPKSPPERITFTLPVINSASNVVVVVTGESKAEAVHLAIDDAGADCLSLPARLVQPTKG KLAWFLDKLAASKLDGSQFSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Potri.008G097200 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	7.34	0.7522
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.008G181000 [exp]	13.41	0.7175
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	16.58	0.6953
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	19.39	0.7430
AT1G78020			Protein of unknown function (D...		Potri.005G078600 [exp]	19.74	0.7096
AT3G19340			Protein of unknown function (D...		Potri.014G144300 [exp]	22.38	0.7222
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.016G112300 [exp]	32.37	0.7037
AT2G46550			unknown protein		Potri.002G173200 [exp]	34.49	0.6993
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	34.64	0.6895	Pt-TGA3.2
AT5G58900	MYB		Homeodomain-like transcription...		Potri.001G248800 [exp]	39.15	0.7051

Compare expression of checked genes

Potri.008G097200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.