Plant FIBer expression Database

Potri.008G097400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30000 749 / 0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1.2)
AT1G69190 700 / 0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037062
[exp]
714 / 0 AT4G30000 669 / 0.0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1.2)
Lus10036922
[exp]
709 / 0 AT4G30000 664 / 0.0 Dihydropterin pyrophosphokinase / Dihydropteroate synthase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00809 Pterin_bind Pterin binding enzyme
CL0036 PF01288 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Representative CDS sequence
>Potri.008G097400.1 pacid=42807726 polypeptide=Potri.008G097400.1.p locus=Potri.008G097400 ID=Potri.008G097400.1.v4.1 annot-version=v4.1
ATGATTCTTTTCAAGCAGCTGCTGCCCACCAAACGTGGGCTAGGTGGTGCCTTGAACCACTTCAGAGGATCTTCCTTTCGCCTTTTCAGTTCATCCCCAG
AAACATTTGTGGAAATTCGTTCACAAGAGAAGGAAGTAGTGATTGCTTTAGGAAGCAACGTGGGCAACAGACTTCATAATTTTAATGAAGCATTGCGACT
GATGAAGAAATCTGGAATAAACATCACTAGACATGCCTGTTTATATGAGACAGCGCCTGCCTATGTCACTGATCAGCCTCAGTTCCTTAACTCTGCGGTT
AGAGGTGTTACGAAACTTTGGCCACATGAGTTGTTGGGAGTGCTTAAGAAAATCGAGAAGGATATGGGTCGTACTGCGGGGATAAGGTATGGACCAAGAC
CGATTGATTTGGATATATTGTTTTACGGAAAGTTCAGGGTTAGTTCTGATATACTTACTGTTCCTCATGAGAGAATTTGGGAGAGACCATTTGTAATGGC
CCCGTTGATGGATTTACTGGGAGCAGATGTAGAGAATGATACAGTTGCATGCTGGCATTCTTTGTCAATACATTCTGGTGGACTCTTTGAATCATGGGAG
AAACTGGGTGGTGAATGTATAATTGGAAAGGATGGGATGAAAAGAGTCCTGCCCATTGGAAATGATTTGTGGGATTGGTCCCTGAAAACTTCTGTGATGG
GTATACTTAATTTGACCCCAGATAGTTTTAGTGATGGAGGAAAGTTTCAGTCTGTGGAGGCTGCGGTTTCTCAAGTCCGCTTGATGATTTCAGAAGGGGC
AGATATGATTGATTTGGGTGCACAATCAACAAGACCAGTGGCTTCAAGGATATCCCCTCAGGAGGAATTAGATAGACTAATCCCTGTCTTAGAAGCCATT
CTAAAGATGCCAGAGATGAATGGAAAGCTCATATCTGTCGATACCTTTTACTCGGAAGTTGCTTCAGAAGCAGTCAGCAAGGGTGCTCATATTGTAAATG
ATGTATCTGGTGGACAGTTAGACCCTAACATGACTAAGGTTGTTGCTGGCCTTGAGGTTCCTTATGTTGCCATGCACATGAGAGGAGACCCAGCTACGAT
GCAGAATAGTGAGAACCTGCAGTATGATGATGTTTGTAAGCAGGTTGCCTCTGAGTTGTATTCACGGGTTAAAGATGCAGAATTATCTGGTATACCTGTC
TGGAGGATTATTATTGATCCCGGGCTTGGATTTTCAAAGAAAACCGAGCATAATTTGGAACTTCTCATGGGGCTGCCATCCATTAGAGCAGAGATTGCAA
GGAAAAGCTTGGCTATGTCTCATTCTCCTGTCTTGTTAGGATCTTCTAGAAAGAAATTTTTAGGTGAAACTTGCTCTCGTCCCGCTGCAAGCGAGAGAGA
TCCTGCAACAGTAGCTTCAGTCACTGCTGGGGTTTTGGGAGGTGCAAACATTGTAAGAGTACATAATGTTAGAGATAATCTAGATGCTGTTAAGCTCTGC
GATGCAATGCTGAAGTACAAGAGATCTCCTGCATAA
AA sequence
>Potri.008G097400.1 pacid=42807726 polypeptide=Potri.008G097400.1.p locus=Potri.008G097400 ID=Potri.008G097400.1.v4.1 annot-version=v4.1
MILFKQLLPTKRGLGGALNHFRGSSFRLFSSSPETFVEIRSQEKEVVIALGSNVGNRLHNFNEALRLMKKSGINITRHACLYETAPAYVTDQPQFLNSAV
RGVTKLWPHELLGVLKKIEKDMGRTAGIRYGPRPIDLDILFYGKFRVSSDILTVPHERIWERPFVMAPLMDLLGADVENDTVACWHSLSIHSGGLFESWE
KLGGECIIGKDGMKRVLPIGNDLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDLGAQSTRPVASRISPQEELDRLIPVLEAI
LKMPEMNGKLISVDTFYSEVASEAVSKGAHIVNDVSGGQLDPNMTKVVAGLEVPYVAMHMRGDPATMQNSENLQYDDVCKQVASELYSRVKDAELSGIPV
WRIIIDPGLGFSKKTEHNLELLMGLPSIRAEIARKSLAMSHSPVLLGSSRKKFLGETCSRPAASERDPATVASVTAGVLGGANIVRVHNVRDNLDAVKLC
DAMLKYKRSPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30000 Dihydropterin pyrophosphokinas... Potri.008G097400
[exp]
0 1
Potri.001G181701
[exp]
12.32 0.8353
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.007G085000
[exp]
12.88 0.8597
AT1G06730 pfkB-like carbohydrate kinase ... Potri.002G042700
[exp]
18.33 0.8332
AT1G07380 Neutral/alkaline non-lysosomal... Potri.009G040600
[exp]
22.44 0.7746
AT1G11090 alpha/beta-Hydrolases superfam... Potri.011G046500
[exp]
23.36 0.8130
AT1G68300 Adenine nucleotide alpha hydro... Potri.010G123400
[exp]
28.37 0.8011
AT5G11950 LOG8 LONELY GUY 8, Putative lysine ... Potri.006G226100
[exp]
29.49 0.8086
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Potri.008G164900
[exp]
35.83 0.8140
AT2G20142 Toll-Interleukin-Resistance (T... Potri.019G069733
[exp]
48.18 0.8036
AT5G42850 Thioredoxin superfamily protei... Potri.001G225500
[exp]
48.43 0.8038

Potri.008G097400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.