Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RGP3.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08900 670 / 0 RGP3 reversibly glycosylated polypeptide 3 (.1) AT3G02230 640 / 0 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) AT5G15650 636 / 0 REVERSIBLYGLYCOSYLATEDPOLYPEPTIDE2, RGP2, ATRGP2 reversibly glycosylated polypeptide 2 (.1) AT5G50750 580 / 0 RGP4 reversibly glycosylated polypeptide 4 (.1) AT5G16510 361 / 3e-124 RGP5 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G156700 [exp] 712 / 0 AT3G08900 658 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.015G060300 [exp] 671 / 0 AT3G08900 650 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.004G117800 [exp] 659 / 0 AT5G15650 663 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.017G099100 [exp] 657 / 0 AT5G15650 671 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.012G101100 [exp] 630 / 0 AT3G02230 610 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Potri.019G051700 [exp] 367 / 3e-126 AT5G16510 493 / 1e-176 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Potri.015G099400 [exp] 114 / 9e-29 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004640 [exp] 663 / 0 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10026676 [exp] 663 / 0 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10000646 [exp] 662 / 0 AT3G08900 662 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10017868 [exp] 662 / 0 AT5G15650 648 / 0.0 reversibly glycosylated polypeptide 2 (.1) Lus10005076 [exp] 650 / 0 AT3G02230 662 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10036970 [exp] 647 / 0 AT3G08900 645 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10022443 [exp] 635 / 0 AT3G02230 642 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10034376 [exp] 599 / 0 AT3G02230 608 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10016749 [exp] 562 / 0 AT3G02230 570 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10034665 [exp] 412 / 2e-146 AT5G15650 416 / 7e-148 reversibly glycosylated polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03214 [poplar] [flax] RGP Reversibly glycosylated polypeptide
Representative CDS sequence Show only first row Show all	>Potri.008G097600.1 pacid=42807592 polypeptide=Potri.008G097600.1.p locus=Potri.008G097600 ID=Potri.008G097600.1.v4.1 annot-version=v4.1 ATGGCAGGATCTGCAATCAAACCCACACCCCTTTTGAAAGATGAGCTGGATATAGTGATACCCACTATTAGAAACCTTGATTTCTTGGAGATGTGGAGGC CTTTTTTTGAGCAATATCACTTGATTATAGTCCAAGATGGTGATCCATCAAAGACAATCAAGGTCCCTGACGGTTTTGACTATGAGCTCTACAACAGGAA TGATATTAATAGGATTCTGGGTCCTAAGGCTTCTTGCATTTCATTCAAGGACTCTGCTTGTCGCTGCTTTGGTTACATGGTCTCCAAGAAGAAGTATATC TACACCATTGATGATGATTGCTTTGTTGCCAAAAACCCATCAGGCGAACAGATTAATGCACTCGAGCAGCACATCAAAAACCTTCTGAGCCCATCCACTC CATATTTCTTTAACACTCTTTATGATCCGTACAGAGAAGGTGCAGACTTTGTTCGTGGATATCCTTTCAGTCTTCGAGAAGGTGCTGCCACTGCTGTTTC TCATGGCCTCTGGCTTAATATCCCTGATTATGATGCTCCCACCCAGCTTGTGAAACCTCTGGAGAGAAATAAGCGATATGTTGATGCTGTTCTGACAGTA CCTAAGGGAACCCTTTTCCCGATGTGTGGTATGAATCTAGCATTCAATCGTGAATTGATTGGACCTGCTATGTATTTTGGACTCATGGGAGATGGTCAGC CAATCGGACGATATGATGACATGTGGGCTGGCTGGTGCATGAAGGTCATATGCGACCACATGGGATGGGGAGTTAAGACTGGCTTGCCCTACATCTGGCA CAGCAAAGCAAGCAACCCATTCGTTAATCTCAAGAAGGAGTACAGGGGGATCTACTGGCAGGAAGACCTGATACCATTCTTCCAGGCCGCAGTTCTTCCC AAGGAATGCGTCACTGTTCAACAATGCTACATTGAACTCGCCAAGCAGGTCAAGGAGAAACTTGGCAAGGTTGATCCCTATTTCATTAAACTAGCTGATG CCATGGTCACTTGGATTGAAGCTTGGGATGGACTCAACTCTTCAGAGGAAAAATCTTCGAAGCAACCCAACGGGACAGCAAAGTAG
AA sequence Show only first row Show all	>Potri.008G097600.1 pacid=42807592 polypeptide=Potri.008G097600.1.p locus=Potri.008G097600 ID=Potri.008G097600.1.v4.1 annot-version=v4.1 MAGSAIKPTPLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI YTIDDDCFVAKNPSGEQINALEQHIKNLLSPSTPYFFNTLYDPYREGADFVRGYPFSLREGAATAVSHGLWLNIPDYDAPTQLVKPLERNKRYVDAVLTV PKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGWGVKTGLPYIWHSKASNPFVNLKKEYRGIYWQEDLIPFFQAAVLP KECVTVQQCYIELAKQVKEKLGKVDPYFIKLADAMVTWIEAWDGLNSSEEKSSKQPNGTAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	0	1	Pt-RGP3.4
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.014G094800 [exp]	1.41	0.9514	AGP20.1
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.002G208251 [exp]	1.73	0.9506
AT5G18610			Protein kinase superfamily pro...		Potri.010G215100 [exp]	2.23	0.9482
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	2.44	0.9460	Pt-SAH7.2
AT4G15790			unknown protein		Potri.008G207500 [exp]	3.46	0.9391
AT3G50150			Plant protein of unknown funct...		Potri.016G040100 [exp]	3.87	0.9367
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	4.24	0.9426
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	4.89	0.9528
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	5.29	0.9441
AT3G62060			Pectinacetylesterase family pr...		Potri.014G110900 [exp]	6.00	0.9325

Compare expression of checked genes

Potri.008G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.