Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26330 444 / 3e-135 DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232800 [exp] 48 / 4e-05 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000645 [exp] 429 / 9e-130 AT1G26330 333 / 5e-96 DNA binding (.1.2) Lus10036969 [exp] 116 / 2e-26 AT1G78270 190 / 3e-53 UDP-glucosyl transferase 85A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05965 [poplar] [flax] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Potri.008G097700.2 pacid=42807188 polypeptide=Potri.008G097700.2.p locus=Potri.008G097700 ID=Potri.008G097700.2.v4.1 annot-version=v4.1 ATGGCGAAATCTAAACTAAAGGAAGAAGGAGAAGATCGAGAGGAGGCGGAGAAAACAGGCGGTCTTGAATTAGTTTCAATCGGATCTCTCTATAGCGGTG GCGCCTGGGACAAGAAGTACTGGAGCTCTACTAGGGGTAAAGATCGGTATCCTTATCCTGTTGGATACCAAGCTCGTCGAGCTTACAATGGGGGAGCTTA TAAGATGGAAATTCATGAAGGTCCTAAAGGGCCTTTATTTGCGATCACTTCCACTGATGGATATTCATGTTCCGGTCAAACTCCTGATATTGTGTGGCAG AAATTTCAGAAGAATTGTTGCCCTCACACAAAGATTTGGCATGGAAAAAGATTTTCATGCATGATAGATGGCATAGAGTTTTTTGGGTTCAAAAATCCAT TTGTCCAGAGGTTACTACGAGAACTGGTGACAAATGTAAATGGGATTGCAGAACAGAGCCCACTATCCCCCAGCTTCTCCAATGGGTCCACTGGAACAGA GCTAAATAACCGATGCACAGATGCATGCACACATCCCAATCTACCACCCTACTTGGCAAGATCTCAGGTTAAGGGAAAGAGAAGTAAGAGCCAAAAAATT ACGAATCCTGAGTCATTAAGTACTGCTAGCTTTAAAAGATCCCGAGCTGAAGATGTAATGTATATTGCCGAGCCATCTGATTCAGCTTCCAAAACTCATA AGCAATGGAGGTCTACTTTAAGTTTTAACCAAGAGCAGGAGTCTTGTAAACTTCCAGTAACATTGTCAACTGCAGTTTGCTTAAAACCTGTAGCTGGAGG AGAAACTGATCACTCATCAGCCAAGGATGATTTTCCCTTGAAGTCAGTTGACTTCTCTGATCATCTTACAGAAAAAGCTGCCCCTGGGCCTGAAGAAAGC ATGCTTGCTTGGTCTAAAAGTTCTAAATCCACCACTGGAGTCGTCAACTTGTCTGTGGAAGATAAAATTCTTGATAGGTCACTGGATACTAAAGTGGAAG GGTCAAATTTTACAATGTCAGTGGAAGGCCAGGCTGAAGATGCAACAGCTCCAAAAGACCAGCCATGTGTACCCAATGTTGATCTTTGTGCACCTGATAC CTTAGATTTTGAGCAAGATAATATTACAAATTCTGCTCAAGCTACCCATGATATAAGTGCTTGCAGTGTCAGAGAAGAGTTACTGGTGACTGAGGCCATC ACTTCCCAAGGACTTATAACTGAATCGCACCCAGAAGAAGTAATAGGCACACCCAACTCAAATGGGAATTCTGAAAGAAGTGATTTTGATTCAGCAGGTC AAGACATAGCCAAGTCAATGATGACGTTTCTGCTTCCTCAAGCAATACCTCTGCTCAAAAACAAGTCAAGAAAAAAGAAGACCATTGGTTATTCAGAGAT TTTGCCTAATACACCAAAACCTCATGAAAATAATGATGAAAATCTCCAATTCGTGGAGGCTCAATCTCCTTGTGTATATGGTTCAGTTCTCCCAGGTTCT GAGCATGTGAAGTCTGTTGTTCTTGACAGTTTTGATGGTGACCAATGTGGGGTTCATGTAACAAACCAGCCAATATCACCCTCCAATACTGCTGAGGCTG ATCAACCTTGTTTTGATACAGATGCATGTCCTCCCTGCAGAGTGGATCAGTTTGTTAATATAGATGGGACGGAGTCATCAGTTTGTCAGTTTGACACTGA TGGGATTAAAGACATCTTTTGTCACAACCAAGTGCAAAGCAAAGTGCAATTGGCTTTGGATAAAAGGCATCGGGATGATTATCTATACCCTTATGAATCT GTTTCTGGCATCAAGTCTGCCAATGAAAATGTTTTGTATGAAGAAAATCAGGATATTTGCAAAAAAATGGATGAAAACTCAATTGGTACCAAATTCCTTC CTGGGGAAAAAGACCTCAACCTTGGAACAGATTTCAATGATGTGGTTACTAAAAGTAATATGAGCCAAAGAGGTTTAGGCGCTTCTGTGCAAATATTAAG GAATGACATCAGTGTCAAGGCTGAGACTTCTGAATCAGGCAATTTGTCTACTGCTCAAGTGACAAAAAACGTATATACCAGAAAAAAGGTCTCAAAAGCA GCATCTTCAACAAGAAAATGTAATGCTTCATTCTCAGAAAGTATTATATGTAGAAATTTGAGAGATGATTCTATCCCAGAAACTACAAGAACTTTACTTA ACTCAGAGATGTTCCAGATGAGTTCTTCTGTGGACAAACCACATAAAAATGCTATTTTTGGTTCTGAACCCATGGTTGGAGACCAGCTCAACGGTATGCA GATAGACGAAACTACTAGTAATCCCAACCCTTTATCAGAGAGCAAGTTGCCTTTTGTATCACAAACTCAAACATTTTCCGGTGCTTCCATGGGCAAAGAT GCTTCAAATCTTTTTGCTGCAACGGTTTCAAAAATAGAAGAACCGCATGCTTATTCTGAAGGCAGGCTGGTTGTGAGCCAGAATACCTCCGATACAAATG GACCACCAGTATTATCTGCGGAGCTAGGAACAGCATTCTCTTGCTATAACACATCCAGTGTCAAGGAAGTTCAGACTAACTCAGACCTAAAACTACATAG GAACTTGAAGCACAACAATGAACTAGAGGGTAACTTTGAGCTTGTGGGGTGCTATCTTCACCCCATGCCTGTTTTGTCACTGTTGGTGGTTACAAAAGGA GATGAAATCAATGTTTGTGCTCTGTGTGGTCATTTGGTAGATAAAAACAGAACCCTGTTTCTGTACAAGCTAGCAATTGAAGAAACAAGAACAGGGAACC CTTCTTTTGTTGGCCACACATCAGTAACGTTTCCATTTTCAACAGATATCTTTGGTAGAGAAACTGCACTTGAACGATCTGGCCTGCAACTAACCCCAGA TGGGCAGAATCTTGTTTTACTTGGCAGCATGAAAACACCTTATTGCAGGGAAGGAAGAACAGATTGTTTGTGCTCAACTTGTTCATTAAACTGCTCTGAG CAAAGTACAGTGAAAATTGTGCAAGTAAAAACTGGATATGTTTCAGTCCTGGTAAAATTGAGTACATTTGACAGCATGCAGTGTATATTGGTCTGTGAAC CTAACCATCTAATTGCTGCTGGAGAGAGTGGGAGACTACATCTCTGGACCATGAATTCAGCTTGGAGTGCACCAACAGAAGAATTTATCATTTCAGCTAA CGATTGCATATCCCCTTGCATAGTGGAGTTGAAGAGGGTTCCGAACTGTGCTTCTGTAGTTGTTGGGAATAACGGCTTCGGGGAATTTACTGTCTGGGAT GTCTCAAGGCGCATGTTCATGGCAAGGGTCTCTTCTCCAAGTGCTTCAGCATGTCAATTCTTTCCAATCAGTTCGTTTACTTGGCAAAGAGTAGTCCATG GTTTCCATTATTCTACTGTGGAGGAGCAAATCGATGGAATCGTAGATGCAACAAAATTATGGTTTTCAGAGAACAGTGAGTATTATTCCTTACCTCCATT GGATGGAGAAGATATTGCCATCTGGCTTCTTGTCTCAACCATTCCTGAGTTGGATACTCAAGAAGACTATATATCAAGTGATTGCGGTATAAATCCAGTT GGGTGGTGGAGGCTAGCTCTACTGGTGAAAAATATGTTGATCCTCGGAAAAGCATTGGATCCAAGGGCTGCTGCTATTGGTTCGTCATCTGGCAATGGAA TCATTGGCACATTTGATGGACTTGTTTATATGTGGGAATTTACAACAGGGACTAGACTTGGCACTCTGCACCATTTTGAAGGTGAAAGTGTTTCCTGTAT TGCTACTGACAATTCGAAGCCAGGAGTCATTTCAGTAGCAGGCGACAAAGGCCAATTACTGGTCTATCGACGGTCTTGCAAATGA
AA sequence Show only first row Show all	>Potri.008G097700.2 pacid=42807188 polypeptide=Potri.008G097700.2.p locus=Potri.008G097700 ID=Potri.008G097700.2.v4.1 annot-version=v4.1 MAKSKLKEEGEDREEAEKTGGLELVSIGSLYSGGAWDKKYWSSTRGKDRYPYPVGYQARRAYNGGAYKMEIHEGPKGPLFAITSTDGYSCSGQTPDIVWQ KFQKNCCPHTKIWHGKRFSCMIDGIEFFGFKNPFVQRLLRELVTNVNGIAEQSPLSPSFSNGSTGTELNNRCTDACTHPNLPPYLARSQVKGKRSKSQKI TNPESLSTASFKRSRAEDVMYIAEPSDSASKTHKQWRSTLSFNQEQESCKLPVTLSTAVCLKPVAGGETDHSSAKDDFPLKSVDFSDHLTEKAAPGPEES MLAWSKSSKSTTGVVNLSVEDKILDRSLDTKVEGSNFTMSVEGQAEDATAPKDQPCVPNVDLCAPDTLDFEQDNITNSAQATHDISACSVREELLVTEAI TSQGLITESHPEEVIGTPNSNGNSERSDFDSAGQDIAKSMMTFLLPQAIPLLKNKSRKKKTIGYSEILPNTPKPHENNDENLQFVEAQSPCVYGSVLPGS EHVKSVVLDSFDGDQCGVHVTNQPISPSNTAEADQPCFDTDACPPCRVDQFVNIDGTESSVCQFDTDGIKDIFCHNQVQSKVQLALDKRHRDDYLYPYES VSGIKSANENVLYEENQDICKKMDENSIGTKFLPGEKDLNLGTDFNDVVTKSNMSQRGLGASVQILRNDISVKAETSESGNLSTAQVTKNVYTRKKVSKA ASSTRKCNASFSESIICRNLRDDSIPETTRTLLNSEMFQMSSSVDKPHKNAIFGSEPMVGDQLNGMQIDETTSNPNPLSESKLPFVSQTQTFSGASMGKD ASNLFAATVSKIEEPHAYSEGRLVVSQNTSDTNGPPVLSAELGTAFSCYNTSSVKEVQTNSDLKLHRNLKHNNELEGNFELVGCYLHPMPVLSLLVVTKG DEINVCALCGHLVDKNRTLFLYKLAIEETRTGNPSFVGHTSVTFPFSTDIFGRETALERSGLQLTPDGQNLVLLGSMKTPYCREGRTDCLCSTCSLNCSE QSTVKIVQVKTGYVSVLVKLSTFDSMQCILVCEPNHLIAAGESGRLHLWTMNSAWSAPTEEFIISANDCISPCIVELKRVPNCASVVVGNNGFGEFTVWD VSRRMFMARVSSPSASACQFFPISSFTWQRVVHGFHYSTVEEQIDGIVDATKLWFSENSEYYSLPPLDGEDIAIWLLVSTIPELDTQEDYISSDCGINPV GWWRLALLVKNMLILGKALDPRAAAIGSSSGNGIIGTFDGLVYMWEFTTGTRLGTLHHFEGESVSCIATDNSKPGVISVAGDKGQLLVYRRSCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26330			DNA binding (.1.2)		Potri.008G097700 [exp]	0	1
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Potri.014G189600 [exp]	3.74	0.8524	BRCA2.1
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	6.32	0.8917
AT4G38760			Protein of unknown function (D...		Potri.004G168700 [exp]	9.16	0.8484
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	10.77	0.8805
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	10.95	0.8138
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	18.57	0.8654	Pt-SOM1.1,CHR905
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	19.69	0.8639
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	21.63	0.8519
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	22.44	0.8555
AT3G27120			P-loop containing nucleoside t...		Potri.001G331200 [exp]	22.47	0.8569

Compare expression of checked genes

Potri.008G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.