Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69170 169 / 2e-47 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G43270 137 / 2e-35 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT5G50570 135 / 2e-35 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 135 / 2e-35 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27370 133 / 3e-34 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT2G42200 127 / 2e-32 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G27360 127 / 3e-32 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT2G33810 117 / 3e-31 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G02065 120 / 4e-30 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G20980 123 / 1e-29 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G154300 [exp] 697 / 0 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G060400 [exp] 265 / 1e-81 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G098900 [exp] 162 / 8e-45 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 154 / 2e-42 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G058600 [exp] 144 / 2e-38 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.018G149900 [exp] 140 / 2e-36 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.003G169400 [exp] 137 / 3e-36 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.003G172600 [exp] 134 / 7e-34 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.016G048500 [exp] 131 / 2e-33 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036812 [exp] 220 / 4e-66 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10000643 [exp] 219 / 7e-64 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 182 / 6e-51 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 171 / 6e-47 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 144 / 4e-39 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 144 / 6e-39 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021614 [exp] 143 / 1e-37 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10023818 [exp] 140 / 4e-37 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10011356 [exp] 138 / 5e-36 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 137 / 1e-35 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.008G097900.4 pacid=42806351 polypeptide=Potri.008G097900.4.p locus=Potri.008G097900 ID=Potri.008G097900.4.v4.1 annot-version=v4.1 ATGGACTTCTGGAGCTATGCTTCAGAAGGAAAAGGCCTTCTTTTCTCTGATGAAATAGATTTATCTGTTGATGCATTTGCAAGAAGTAGAAAAACATTGA TAGGATGGGATACAGAATCGGTTGAGAGTACTGAGTTTATAGATTTTGGTTTCTCTGAAATTCCAAGAAAGCCTTTTCATGGCAGCAAAACAGGTGTGGG TGTGCTTGGTGGTACTGATGGTGGTATTGATTCGAGTAAACTAGTCGCAAGTTCTCCTAATTGCATGATTGCATCCAATTCGTCAATGGAATCCGGGTCC AATCATTCGAATTCTCTCGTGGAATCTAATAGTCAGGATTCATCACTGATTGATTTGAAGCTAGGGAGATTGGCTGATTTCAAAGATGCACAAAATAGCA AGTTTTCGAAAGAGAGGTTGTTATCTTCAGTAAGTCCAACTGCTCAGGCAAAGCGTGCTCGAGCGACATGTTCACGCCCTCAGACTACCTATTGCCAGGT CTATGGTTGTAACAAGGATCTTAGTTCTTCAAAGGATTACCACAAGAGGCATAAAGTTTGCGAGGTTCACTCAAAAACGCCTCAAGTTATTGTTGATGGC AATGAACAGAGGTTTTGTCAGCAGTGTAGCAGGTTTCACTTGCTGGTTGATTTTGATGATGGTAAGCGAAGTTGCCGTAAACGCTTGGCAGGCCACAATG AACGTAGAAGGAAGCCTCAATTGGGTACCCTCTCTGTCAAACCACATAAGTTACTGCATCCATATCAAGGCACCAAATTTCTGGGGACTTCCTTGCCAAA GAAAACATCTCTTCTTTTCCCAAACATGCTTCCAGGGAGTGCTTTTTGTCCAGGAAATTATGAAGAAGAAAATTGGTGCAGGCGCATTAAATTGGAAGAG AATTCAATTTACAGCTCTCCATCTGCAATACCCATGGGAAACGGGCAGTTGCTGCCGAAGTCATTCCTCCATTTGCACGGCAATGGGTTACAAAAGACTT GTGGAATTTCTTCACCGGCAATTGATGACCGCAATTTTTGTAACACAACAACTTTTCATGAGTTAGCTGGGGCGTCGCACTCTAGCTGTGCTCTCTCTCT TCTGTCAGCTGAATCACAGGACTTGAGCCATTCTGCAGGAAATATAACGGCTAGGCCCTTGGTCAGTCAAGTGAGTCATGCTTGTCAGAGCTTGGGTAAT GTTAACAAATCTTTAGGGGTAGGCTCCTTGGAAAAGTACTTCCCAAATGGGCTCTATCCGTCTGGAATGAATTTCATTGAAGTCAACGATATGGGGCCAT TTGTGGTTCCTGGTTCCGGTCACGCAGCGGACTTCCAAGTTGAAACAGATGGATTTCTACAACAGTCAGATATTTTGAATGCGAAGTATGGCGTTTCTCC TGAAAATGGATCAACTGTGGATTTGCTTCAACTCTCATCACATCTTCAGAGGGTGGAGCAACAGAGGAACTCCATGCAAGTGAAGCATGAAAATGAGGAG TTCTGCAGTTTCGGCTCTACTTATGGGGTGTGA
AA sequence Show only first row Show all	>Potri.008G097900.4 pacid=42806351 polypeptide=Potri.008G097900.4.p locus=Potri.008G097900 ID=Potri.008G097900.4.v4.1 annot-version=v4.1 MDFWSYASEGKGLLFSDEIDLSVDAFARSRKTLIGWDTESVESTEFIDFGFSEIPRKPFHGSKTGVGVLGGTDGGIDSSKLVASSPNCMIASNSSMESGS NHSNSLVESNSQDSSLIDLKLGRLADFKDAQNSKFSKERLLSSVSPTAQAKRARATCSRPQTTYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTPQVIVDG NEQRFCQQCSRFHLLVDFDDGKRSCRKRLAGHNERRRKPQLGTLSVKPHKLLHPYQGTKFLGTSLPKKTSLLFPNMLPGSAFCPGNYEEENWCRRIKLEE NSIYSSPSAIPMGNGQLLPKSFLHLHGNGLQKTCGISSPAIDDRNFCNTTTFHELAGASHSSCALSLLSAESQDLSHSAGNITARPLVSQVSHACQSLGN VNKSLGVGSLEKYFPNGLYPSGMNFIEVNDMGPFVVPGSGHAADFQVETDGFLQQSDILNAKYGVSPENGSTVDLLQLSSHLQRVEQQRNSMQVKHENEE FCSFGSTYGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.008G097900 [exp]	0	1
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.005G234200 [exp]	2.23	0.8776
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	6.92	0.8719
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	11.40	0.8470
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	13.41	0.8467
AT1G12210		RFL1	RPS5-like 1 (.1)		Potri.001G443932 [exp]	14.45	0.8251
AT5G67620			unknown protein		Potri.007G005600 [exp]	16.09	0.8040
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Potri.012G083500 [exp]	17.23	0.7745
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.010G174600 [exp]	17.83	0.8523
AT1G72010	TCP	TCP22	TCP family transcription facto...		Potri.019G081800 [exp]	18.49	0.7899
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044600 [exp]	19.07	0.8494

Compare expression of checked genes

Potri.008G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.