Plant FIBer expression Database

Potri.008G098200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69160 133 / 2e-36 unknown protein
AT3G13980 51 / 5e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G154200
[exp]
472 / 1e-168 AT1G69160 114 / 2e-29 unknown protein
Potri.018G065000
[exp]
44 / 0.0001 AT3G42800 139 / 1e-37 unknown protein
Potri.006G144700
[exp]
44 / 0.0001 AT3G13980 130 / 2e-34 unknown protein
Potri.003G063400
[exp]
43 / 0.0003 AT1G54200 173 / 7e-50 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019172
[exp]
139 / 2e-38 AT1G69160 94 / 6e-22 unknown protein
Lus10036813
[exp]
127 / 3e-34 AT1G69160 80 / 4e-17 unknown protein
Lus10004639
[exp]
103 / 1e-24 AT1G69160 55 / 4e-08 unknown protein
Lus10026677
[exp]
94 / 7e-22 AT1G69160 62 / 9e-11 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G098200.1 pacid=42807807 polypeptide=Potri.008G098200.1.p locus=Potri.008G098200 ID=Potri.008G098200.1.v4.1 annot-version=v4.1
ATGTCCATCACCGGACTCTCATCAGACACCGGTAAACCTTACAAGAAGTCCTTGCATCGGAGAAATGATTCTGACGAGCTTGATGTATTTGAGGCAGCAA
GGTATTTCTCGGGATACAATGAAGCAGGTGCAGGTTATAATGGCGCAGTTTACACACAGAAAGTCATGAGAGAAGATCATAAACATTCTTGGAGGGGAGG
AAGAGTGAGCCTAGATGTACCAATGAGGAATCCACTACCTCATCATCTCCATCAACATTCTCATACAGTGGAGAAGCAAATACTGAAAGAGAAGAAATAC
AAACAACCAAGCTCTCCAGGTGGGAGACTAGCCAGCTTCTTGAATTCTCTCTTCAATCAAACAAGCTCCAAAAAGAAGAAATCAAAGTCCACCACGCAAT
CAATGAAAGATGATGATGAGAGCCCCGGTGGAAGGAGGAAAAGGAGGAGCAGCATTAGTCATTTTCGAAGCTCAGGCACTACTGATACAAAGTCTTTGTA
TTCTTCTTCAAGTTCTGGTTTTATGACACCCCCTCCTTATACACACACTCCTACAAAGGGCTACAAGGAGTTCAGAAGCTGTTCAGATCACAGGCAAATA
GTTTCCCTGCCAAAGCAGAATGGGATTGTGAAGTCCATAGCCTTCCGAAATGAGATATTGGATGATAAAAAGAACACAGATTTATCTTGGCTGGAAGAGA
AGTATAAATTCAATGATGGGTTCTCAGATCAGAAAGTACCCAGGAATCGTGGTAATCAACATTTAGAGAAAGACAGGACTTGGGTGGACCAGTATCCATC
AGAGGAAAAGGAATGTAGGAAGTTCGATGAGGTGGATGATGGAACTGAGAGTGATTCAAGCTCTGATTTGTTTGAATTGCAAAACTATGACTTGGCCGGT
ACCTACTCCAATGGTCTGCCTGTGTATGAAACAACACGTATGGATAGCATCAAAAGAGGAGCAGTACCAATTTCCAATGGAACCCTATGA
AA sequence
>Potri.008G098200.1 pacid=42807807 polypeptide=Potri.008G098200.1.p locus=Potri.008G098200 ID=Potri.008G098200.1.v4.1 annot-version=v4.1
MSITGLSSDTGKPYKKSLHRRNDSDELDVFEAARYFSGYNEAGAGYNGAVYTQKVMREDHKHSWRGGRVSLDVPMRNPLPHHLHQHSHTVEKQILKEKKY
KQPSSPGGRLASFLNSLFNQTSSKKKKSKSTTQSMKDDDESPGGRRKRRSSISHFRSSGTTDTKSLYSSSSSGFMTPPPYTHTPTKGYKEFRSCSDHRQI
VSLPKQNGIVKSIAFRNEILDDKKNTDLSWLEEKYKFNDGFSDQKVPRNRGNQHLEKDRTWVDQYPSEEKECRKFDEVDDGTESDSSSDLFELQNYDLAG
TYSNGLPVYETTRMDSIKRGAVPISNGTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69160 unknown protein Potri.008G098200
[exp]
0 1
AT5G06470 Glutaredoxin family protein (.... Potri.006G201300
[exp]
2.23 0.9187
AT2G41820 Leucine-rich repeat protein ki... Potri.016G055400
[exp]
8.77 0.8950
AT3G25130 unknown protein Potri.002G246400
[exp]
9.79 0.8989
AT3G12610 DRT100 DNA-DAMAGE REPAIR/TOLERATION 1... Potri.009G064300
[exp]
10.95 0.8948 Pt-DRT100.1
AT2G39700 ATHEXPALPHA1.6,... expansin A4 (.1) Potri.009G031800
[exp]
11.13 0.8687 Pt-EXPA6.1,PtrEXPA5
AT2G40480 Plant protein of unknown funct... Potri.019G049201
[exp]
13.56 0.8962
AT2G30890 Cytochrome b561/ferric reducta... Potri.002G057900
[exp]
15.19 0.8985
AT2G41890 curculin-like (mannose-binding... Potri.006G053700
[exp]
16.73 0.8644
AT5G64667 IDL2 inflorescence deficient in abs... Potri.005G057400
[exp]
18.16 0.8693
AT1G69080 Adenine nucleotide alpha hydro... Potri.008G109000
[exp]
18.49 0.8774

Potri.008G098200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.