Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47070 834 / 0 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 773 / 0 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 274 / 3e-77 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 249 / 8e-69 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G53160 129 / 3e-34 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT2G33810 121 / 4e-32 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT3G57920 127 / 1e-31 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT1G69170 127 / 3e-31 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G15270 120 / 7e-31 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G02065 123 / 3e-30 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G154000 [exp] 1660 / 0 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G188700 [exp] 1059 / 0 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.014G114300 [exp] 1054 / 0 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.005G258700 [exp] 289 / 5e-82 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G002400 [exp] 288 / 7e-82 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.007G138800 [exp] 127 / 6e-33 AT3G15270 140 / 4e-42 squamosa promoter binding protein-like 5 (.1) Potri.002G142200 [exp] 130 / 9e-33 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.014G057700 [exp] 129 / 1e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.003G169400 [exp] 128 / 4e-32 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038043 [exp] 831 / 0 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 825 / 0 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 620 / 0 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 469 / 3e-150 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10016275 [exp] 126 / 1e-31 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10033993 [exp] 130 / 1e-30 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10012020 [exp] 126 / 3e-30 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10012782 [exp] 129 / 4e-30 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10028181 [exp] 123 / 4e-30 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10018610 [exp] 119 / 5e-30 AT3G15270 127 / 7e-37 squamosa promoter binding protein-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.008G098600.1 pacid=42806789 polypeptide=Potri.008G098600.1.p locus=Potri.008G098600 ID=Potri.008G098600.1.v4.1 annot-version=v4.1 ATGGAGGCTACAATTGGTGGAAAGTCTCGTCATTTCTATGGTCCAGTGGTGTCGGATTTAAAGGCAGTTGGGAAAAGGAGTTTAGAATGGGATTTGAATG ACTGGAAATGGGACGGTGATCTTTTTAAAGCTAGTCCATTGAATTCTGCACCATCTGATTGCAGGAGTAGGCAGTTGTTCCCAACTGGACCTGTACTTCA TGAGAATGCGGGTTTGTGGAACAGTTCATCTTCTTGTTCCGATGACAATGACAACTTGGGGGATGAGAAAGGAAAGAGAGAATTGGAGAAGAGGAGGAGG GTTGTTTTTGTTGAAGATGAAAACTTGAATAATGAAGTTGGGTCCCTTAATTTGAAGCTAGGAGAGCAAGTCTACCCCTTAATGGATGAAGATGCAAAGA GTGGAAAGAAGACAAAGGTTACTATGACTGCTTCAAATCGTGCAGTTTGTCAGGTGGAGGATTGTAGGGCTGATCTGAGCAATGCCAAGGATTATCACCG ACGACATAAGGTTTGCAATGCGCACTCTAAGGCCAGCAAGGCATTGGTGGGGAATGTTATGCAGCGGTTTTGCCAGCAATGTAGCAGGTTTCATGTTCTT CAAGAGTTTGATGAAGGGAAAAGAAGCTGTCGCAGGCGTTTGGCAGGGCATAACAAGCGGAGGAGGAAGACGCATCCTGAAAATTTAGTCAATGAAGGTT CATTGAATGATGAAAAGGGTAGCAGCTATCTGCTGATAAGTTTACTGAGGATTCTCTCCAATTTGCACTCAAATGGCTCTGATCAAACAAAGGATCAGGA TCTGCTTTCTCATATATTGAGGAGCCTGGCGGATCTAGCTGGTGCAACTAATGGAAGGAGCCTATCTGAATCACTGCAAGGATCTCAAGGTTTGGCTAAT GCCAGAGCAATCGTCGGGAATCTTGATAAAGCACATGATGCTCTTACAAATGGCCCTGAATCTGCTAGACCTTCTAGCTCAGCTTCTAAGAAAGATGATT GCATTATTTCTCAGGATCTTCTACGGCCTTTGGGTCAATGTGGGACTGTACCTATTTCTGACTTGGTGCAAAAAAGAATATTGGATAATGATGCTCAGGT TGGAACACTTCAAGCTCCTTCAGGTTCACAGTCTATAACATTGTTCCCATCAAGAAACAACCTTCCAGCCAAAACAAATGAACCAGAGGCTACTGTTGGA AGGATCAAATTAAATAACTTTGACTTGAATAATGCTTATGATGATTCCCAACACTCCGTAGAGAACCTAGAGAGGTCTCATGCACCTGTAGATACAGGTA TGGGCTCTTTCAGTTGCCCGTTATGGGTTTGGTCAGACTCACAAAAAACAAGCCCGCCGCATACTAGTGGGAAATCTGATTCAACTTTTAGCCAGTCGCC TTCTAGTTCAAGTGGAGAAGCTCAGATTCGTACAGACAGAATTGTTTTTAAACTCTTTGGAAAAGACCCAAACGATTTCCCAGTTGCGCTGCGAACACAG ATCCTTGATTGGCTATCTCACAGTCCCACGGACATCGAGAGCTATATAAGGCCCGGATGTATTGTATTGACAATATATCTTTGCCTCGAAAAATCAAAAT GGGAAGAGGTTTGTCTTGATCTAGGAGCAAGTTTAAGTAGGCTTCTTAATACATCTAGTGACTCTTTTTGGCAAACTGGATGGGTGTATGTTAGGGTGCA AAATTGTGTATCCTTTATTTATAATGGTAGAGTTGTTTTAGACACACCATTACCTATAAAGAGCCATAAGAACTGCAGGATCTCAAGCATCACACCTATT GCTGTCTCTTTGTCTGAGAGAACTCAATTTGTAGTCAGAGGCTTTGACATTGCTCAGCCTATGACAAGGCTGCTTTGTGCTGTTGAAGGAAAATATCTAG TCCAGGAAACTTGTTATGACTTGATGGATGGTGCTGATACAATGAATGAGCTTGACAAACCCCAGTACTTGAACTTTCAGTGCTCTGTACCAAATTTTGT TGGAAGAGGCTTTATTGAGGTTGAAGACCATGGTCTCAGCAGCAGCTTTTTCCCATTCATTGTTGCTGAGCCAGAAGTATGTTCAGAAATCCGTATGCTG GAGGATGCAATTCAGGTGGCTGAGACTGCTACTGACATGCATACAATAGCTGAAAGAATGGACATCAAGAATCAAGCGCTGGACTTCATACATGAAATGG GCTGGCTTCTACATAGAAGTCGCTTGAAATTTAGACTGGGCCAGTTGGATCCCAACTTGGATCTCTTCCCTTTCAAACGCTTCAAATGGCTTATACAATT CTCCATGGACCATGATTGGTGTGCTGTGGTGAGAAAACTCTTGGCCGTTGTGTTTGATGGAACAGTAGATGCGGGGGAGCATTCCTCAATTGAGCTTGCC CTGTTAGATATGGGTCTTCTCCACAGAGCTGTGCGAAGAAACTGCAGGCCCATGGTGGAACTACTATTAAGATACATCCCAGATAAAAAATTCGGTGGAA CAGGCACTCAGCAGAATCAACTGGTTGATGGGCGCAACAGCAGATTCATGTTTAAACCTGATGTTGTTGGACCAGCTGGATTGACTCCTCTTCATGTGGC AGCTTGTAGGGATGGTGCTGAGAATGTGTTGGATGCCTTGACTGATGACCCTGGATTGGTGGGAATAGATGCATGGAAGAGGGCTCGTGACAGCACAGGT CTGACACCTTATGATTATGCATGCCTGCGAGGTCATTACTCTTACATTCATCTAATCCAGAGGAAAATCAATAAGAAATCAGAAAGTGGGAACGTGGTGC TTGACATCCCTAGTTCCCTTGTGGATTGCAATTCCAAGCAAAAAGATGGGAATGAATTACCAAAAGTGACCAGCTTGCACACTGAGAAGATCAAAATGAA AGCAACACATCAGCACTGCAAGTTATGTGAGCAGAAGCTGGTTTGTGGTGCAGCAAGAACATCTCTGGTATACCGGCCAGCAATGCTCTCAATGGTGGCC ATTGCAGCCGTCTGTGTATGTGTAGCTCTGCTCTTCAAGAGTTCTCCTGAAGTTCTTTACGTGTTCCAGCCTTTCAGATGGGAATTGCTGAAGTATGGAT CAAGCTAA
AA sequence Show only first row Show all	>Potri.008G098600.1 pacid=42806789 polypeptide=Potri.008G098600.1.p locus=Potri.008G098600 ID=Potri.008G098600.1.v4.1 annot-version=v4.1 MEATIGGKSRHFYGPVVSDLKAVGKRSLEWDLNDWKWDGDLFKASPLNSAPSDCRSRQLFPTGPVLHENAGLWNSSSSCSDDNDNLGDEKGKRELEKRRR VVFVEDENLNNEVGSLNLKLGEQVYPLMDEDAKSGKKTKVTMTASNRAVCQVEDCRADLSNAKDYHRRHKVCNAHSKASKALVGNVMQRFCQQCSRFHVL QEFDEGKRSCRRRLAGHNKRRRKTHPENLVNEGSLNDEKGSSYLLISLLRILSNLHSNGSDQTKDQDLLSHILRSLADLAGATNGRSLSESLQGSQGLAN ARAIVGNLDKAHDALTNGPESARPSSSASKKDDCIISQDLLRPLGQCGTVPISDLVQKRILDNDAQVGTLQAPSGSQSITLFPSRNNLPAKTNEPEATVG RIKLNNFDLNNAYDDSQHSVENLERSHAPVDTGMGSFSCPLWVWSDSQKTSPPHTSGKSDSTFSQSPSSSSGEAQIRTDRIVFKLFGKDPNDFPVALRTQ ILDWLSHSPTDIESYIRPGCIVLTIYLCLEKSKWEEVCLDLGASLSRLLNTSSDSFWQTGWVYVRVQNCVSFIYNGRVVLDTPLPIKSHKNCRISSITPI AVSLSERTQFVVRGFDIAQPMTRLLCAVEGKYLVQETCYDLMDGADTMNELDKPQYLNFQCSVPNFVGRGFIEVEDHGLSSSFFPFIVAEPEVCSEIRML EDAIQVAETATDMHTIAERMDIKNQALDFIHEMGWLLHRSRLKFRLGQLDPNLDLFPFKRFKWLIQFSMDHDWCAVVRKLLAVVFDGTVDAGEHSSIELA LLDMGLLHRAVRRNCRPMVELLLRYIPDKKFGGTGTQQNQLVDGRNSRFMFKPDVVGPAGLTPLHVAACRDGAENVLDALTDDPGLVGIDAWKRARDSTG LTPYDYACLRGHYSYIHLIQRKINKKSESGNVVLDIPSSLVDCNSKQKDGNELPKVTSLHTEKIKMKATHQHCKLCEQKLVCGAARTSLVYRPAMLSMVA IAAVCVCVALLFKSSPEVLYVFQPFRWELLKYGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.008G098600 [exp]	0	1
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	3.74	0.8498
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	11.66	0.8213
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	12.68	0.7970	Pt-MKP1.2
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	18.49	0.8114	GTE910
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	18.97	0.7947
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	19.89	0.7995
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	22.04	0.7846
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	22.09	0.8049
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	22.44	0.7602
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	25.39	0.7873

Compare expression of checked genes

Potri.008G098600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.