Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06430 692 / 0 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 312 / 5e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 308 / 1e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39620 177 / 9e-50 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 167 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 146 / 2e-37 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G18940 141 / 1e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16010 129 / 6e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 129 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 127 / 6e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G153900 [exp] 833 / 0 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 340 / 1e-111 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 317 / 5e-103 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 174 / 1e-48 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G069100 [exp] 155 / 2e-40 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G166200 [exp] 153 / 9e-40 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 149 / 3e-38 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 147 / 1e-37 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 143 / 1e-36 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000862 [exp] 600 / 0 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 594 / 0 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 468 / 2e-162 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 354 / 6e-121 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 327 / 2e-106 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 321 / 4e-104 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 295 / 2e-94 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035850 [exp] 166 / 3e-45 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013894 [exp] 160 / 8e-42 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 157 / 4e-41 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.008G098700.5 pacid=42808265 polypeptide=Potri.008G098700.5.p locus=Potri.008G098700 ID=Potri.008G098700.5.v4.1 annot-version=v4.1 ATGTCTCTCTCCTTCTCCTCTTCACTCCTCCCCTCCCCTCTCCCTCACAACAAAAACACCCCTAAACACAAAACCCATCAACAACTGCAACAAAGCCAAA ACCCTCTTCACACTCACAAACTTCTTCTCCGATGTGCATTTACCTCTGCTGCTACTGCACTACCTTCTTCATCTTCTCCTAAAAAGAAGCATTGGAAACA AGGTGAATTCCCTGGAATAACTGACACTTCAGTTCCCAGGAGAACCGCAATAAAAAACATCAAGAAGAAATTAGACCGCAAGAACAAAGCCAAGGCTTGG GTCAATACTGTAGCTGAAGCTTTAACTGATTGCGTTCTCAAGAAACAATGGCTCCAAGCACTTCAGATGTTTGAGATGCTAAAGGAACAACCTTTTTATC AACCAAAGGAAGCTACATACATGAAACTCTTGGTACTCTTGGGGAGATGTGGTCAGCCTCAACGTGCCCACCAAATTTTCGACGAAATGATTGAAGAAGG AATAGAACCCACATCTGAATTTTACACTGCGTTGCTTGCAGCTTATTGTCGAAACAATCTTATCGAGGAGGGTTTCTCAATTATTAACCAGATGAAGACT GTCCCTCGTTGCCAGCCTGATGTTTACACTTACAGTACTTTACTTAAAGCTTGTGTTGATGCTTCGAGATTTGAGTTAATTGACATTTTGTATCAAGAAA TGGATGAAAGATTGATAAGTCCAAACACAGTCACGCAGAATATAGTTTTGAGCGGATTTGGGAAGGTGGGGATGTATGATCAGATGGAGAGAGTGTTATC TGGGATGTTAGAGAGCAAGACATGTAAACCAGATGTTTGGACTATGAATATAATTCTTAGTGTGTTTGGTAATAAGGGTCATGTTGATTTGATGGAGAGA TGGTATGAAAAGTTTAGAAATTTTGGAATTGAGCCAGAAACTCGCACTTTCAATATTTTGATTGGTGCATATGGGAAGAAACGGATGTATGATAACATGT CATCAGTGATGGAATACATGCGCAAGCTTCAGTTTCCGTGGACGACTTCTACTTACAATAATGTTATTGAGGCTTTTGCAGATGTGGGGGATGCAAAAAA CATGGAGTATACATTTGATCAAATGCGTGCAGAGGATATGAAAGCAGATACAAAGACATTCTGTTGCCTTATTAATGGATATGCCAATGCGGGTCTATTC CATAAGGTCATTAGCAGTGTCCAGTTGGCTGCAAAGTTTGAGATACCGGAGAATACATCATTGTATAAGGCAGTTATATCTGCGTGTGCAAAGGCAGATG ATTTGGTAGAGATGGAGAGAGTTTTTAAGCAGATGAAAGATAAGCAATGCCTCCCTGATTCCAGAACCTACTCTATCATGGTTGAAGCATATAGAAAGGA AGGTATGAATGACAAGATCTACTATTTGGAGCAGGAGAAACAAAAGATGATTGCCAATGGTGCTTTAAGTGATTAG
AA sequence Show only first row Show all	>Potri.008G098700.5 pacid=42808265 polypeptide=Potri.008G098700.5.p locus=Potri.008G098700 ID=Potri.008G098700.5.v4.1 annot-version=v4.1 MSLSFSSSLLPSPLPHNKNTPKHKTHQQLQQSQNPLHTHKLLLRCAFTSAATALPSSSSPKKKHWKQGEFPGITDTSVPRRTAIKNIKKKLDRKNKAKAW VNTVAEALTDCVLKKQWLQALQMFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAYCRNNLIEEGFSIINQMKT VPRCQPDVYTYSTLLKACVDASRFELIDILYQEMDERLISPNTVTQNIVLSGFGKVGMYDQMERVLSGMLESKTCKPDVWTMNIILSVFGNKGHVDLMER WYEKFRNFGIEPETRTFNILIGAYGKKRMYDNMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFDQMRAEDMKADTKTFCCLINGYANAGLF HKVISSVQLAAKFEIPENTSLYKAVISACAKADDLVEMERVFKQMKDKQCLPDSRTYSIMVEAYRKEGMNDKIYYLEQEKQKMIANGALSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.018G067500 [exp]	1.00	0.9624
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	3.74	0.9454
AT1G57790			F-box family protein (.1)		Potri.016G079300 [exp]	6.92	0.9308
AT1G20830		MCD1	multiple chloroplast division ...		Potri.005G255300 [exp]	7.14	0.9170
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	7.34	0.9444
AT5G37930			Protein with RING/U-box and TR...		Potri.004G072800 [exp]	7.34	0.9462
AT1G26880			Ribosomal protein L34e superfa...		Potri.012G108301 [exp]	7.41	0.9379
AT3G06950			Pseudouridine synthase family ...		Potri.008G206200 [exp]	8.00	0.9558
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	10.39	0.9506
AT2G45830		DTA2	downstream target of AGL15 2 (...		Potri.014G081600 [exp]	13.03	0.8919

Compare expression of checked genes

Potri.008G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.