Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53480 1853 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1806 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1) AT4G15230 1749 / 0 ABCG30, ATPDR2, PDR2 ATP-binding cassette G30, pleiotropic drug resistance 2 (.1) AT4G15215 1732 / 0 ABCG41, PDR13, ATPDR13 ATP-binding cassette G41, pleiotropic drug resistance 13 (.1) AT4G15236 1697 / 0 ABCG43 ATP-binding cassette G43, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT4G15233 1650 / 0 ABCG42 ATP-binding cassette G42, ABC-2 and Plant PDR ABC-type transporter family protein (.1.2) AT1G59870 1465 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 1456 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1432 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G66950 1407 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G006000 [exp] 2323 / 0 AT3G53480 1921 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.010G153800 [exp] 2202 / 0 AT3G53480 1881 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.008G098850 [exp] 2148 / 0 AT3G53480 1825 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.010G153700 [exp] 1861 / 0 AT3G53480 1788 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.002G188900 [exp] 1829 / 0 AT3G53480 1731 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.001G189500 [exp] 1448 / 0 AT1G59870 2113 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Potri.006G248500 [exp] 1442 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1438 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G049600 [exp] 1433 / 0 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025824 [exp] 1448 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10014150 [exp] 1447 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10037562 [exp] 1425 / 0 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10041668 [exp] 1394 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1372 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1363 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1359 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1348 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 1346 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10034020 [exp] 1334 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated
Representative CDS sequence Show only first row Show all	>Potri.008G099000.1 pacid=42806895 polypeptide=Potri.008G099000.1.p locus=Potri.008G099000 ID=Potri.008G099000.1.v4.1 annot-version=v4.1 ATGGCTCAGCTGGCCGGCCCTGATGAAATAGAGTCATTTCGGATTGAGTTAGCAGAGATTGAAAGAAACATAAGAACCTCATTCAGGAGTCAAGTGCCGA GTTTTCATAGTGTTTCAAATGGGAGTTCTGAGCACATTAGGGATGCAGATGATGAAGATATGTTACAGTGGGCTACTGTTGAGAGATTACCCACCTTTGA ACGGATTACTACTGCTTTATTTGAGGAGCAAGATTGCACTGCGGCAAATGGAGATGCTAAGGGGAAAACAATTGTCAATGTTTCCAAACTTGGGGCTCAG GAGCGGCATGTGTTCATCGAGAAGCTCATCAAGCACATTGAAAATGATAATCTCCGATTGCTGCGGAGACTTAAGCAAAGGATTGACAAAGTTGGTGTGA AGTTTCCCACTGTGGAAGTGAGATACAGAAATCTTTGTGTTGAAGCAGAATGCGAGTTAGTTCACGGAAAGCCTCTACCCACTCTGTGGAACACTGCCAA GAGCTTGCTCTCTGGGTTTGCCAGTCTCTCATGCTCAAAACGGAGAACCAAGGCAGGCATCTTAAAAGATGCCGGTGGCATTCTTAAGCCAGGAAGAATG ACGTTATTGCTCGGCCCCCCAGGATGTGGCAAAACCACTTTGTTGTTGGCTCTGTCTGGGAAACTAAGCCATGCTCTCGAGGTCTCGGGAGAGATATCTT ACAATGGTCACAGCTTGGAAGAGTTTGTTCCTCAGAAATCCTCAGTGTATATAAGCCAACACGATCTGCATATTCCAGAGATGACGGTGAGGGAAACAAT TGATTTTTCTGCACGTTGTCAGGGCATAGGAAGCAGAGCTGATATCATGATGGAAGTCATTAGAAGAGAGAAGCAAGCGGGGATACTTCCAGATCCTGAT GTGGATGCTTACATGAAGGCAATATCAGTTGAGGGACTGAAAAGTACACTTCAGACAGACTACATATTGAAGATTCTAGGACTTGATATTTGTTCTGATA TAATGGTTGGGGATGCCATGAGAAGAGGTATCTCAGGTGGTCAGAAGAAAAGGCTGACTACAGGGGAGATGATTGTGGGGCCCGTGAAAGCACTCTTCAT GGATGAAATATCAAATGGCTTAGACAGTTCAACCACTTTCCAGATTATGTCTTGTATGCAGCATTTGGCTCACATTACTGATGCAACTGTATTGATTTCC CTACTTCAGCCAGCACCGGAGACCTTTGATCTATTTGATGATATCATTCTAATGGCTGAAGGGAAGATTGTTTATCACGGGCCACGTTCTACTATTAGCA AATTTTTTGAAGACTGTGGATTCAGGTGCCCTGAAAGAAAAGGCATAGCGGACTTCCTCCAAGAGGTTATCTCAAGAAAAGATCAAGGGCAATACTGGCA CCGTACTGAACAACTTCACAGTTACATACCAGTTGACCAGTTTGTTAAGAAATTCAAAGAAAGCCAGTTTGGTGAGAAGCTAGACAAGGAGCTGTCAAGG CCATTTGATAAGTCTAAAAGCCACAAGAATGCCTTAACCTTCTCTAAATATTCATTAACAAAGTGGGAACTCTTCAAAGCTTGCAGTATGAGAGAATTTC TTATGATGAAGAGGAATTCTTTTATATACGTGTTAAAATCTATACAGCTAGTTATTGTTGCTTCAATATGTATGACAGTCTTGCTGCGTACAAGAATGGG TGTTGATGAGATCCACGCAAATTATTACATGGGTGCTTTATTCTATGCCCTTGTTATATTAGTTGTTGATGGAGTTCCAGAGTTACAGATGACTACCTCC CGACTTGCAGTTTTTTATAAGCAGAGAGAGTTATACTTTTATCCTGCTTGGGCTTATGCGATCCCAGCTGCTATTCTTAAAGTTCCACTTTCTTTAATGG AAGCTTTTGTTTGGACAGCCCTTACTTACTATGTCATTGGTTACAGCCCTGAGCTTGAAAGGTTCCTCCGGCAATTTCTTATACTATTTCTGTTACATTT AGCATCATTATCCATGTTTCGTTTTGTTGCCTCAATCTTCCAAACCGCGGTTGCTTCAATGACAGCTGGAAGTATCGCTATTATGGGTTGTTTACTATTT GGTGGCTTTGTAATCCCAAAACCCTCTATGCCTGCTTGGTTGCAATGGGGATTTTGGATTTCTCCAATAACATATGGTGAGATAGGTTTGACGACAAATG AGTTTCTTGCTCCTCGATGGGAAAAGATTGTGTCCGGTAACACAACCATAGGGCAACAAACACTAGAAAGCCGAGGGTTAAACTTCCATGGCTATTTTTA TTGGATATCAGTTGGTGCCTTGATGGGGTTGGCTTTACTTTTCAACATTGGTTTTACCTTGGCTTTAACGTTCTTGAAACCTCCGGGAAACTCTAGAGCT ATCATTTCTTATGAGAGGTACTATCAACTACAAGGGAGAAAGGATGATGTTGATGGTTTTGACGAAGACAAAAAACTCCACAGCGCTAATGAATCTAGCC CCGGCCCTAAAAAAGGAAGGATGGTTTTACCTTTTGAACCCCTTGTGATGACATTTAAGGACGTGCAATATTATGTTGACACCCCCTTGGAAATGAGAAA ACGAGGTGTTTTGCAGAAGAAGCTCCAGCTTCTATCCGACATTACTGGTGCATTCAGGCCCGGTATTCTTACAGCACTGATGGGGGTTAGTGGAGCCGGG AAAACGACTCTTATGGATGTTCTTTCTGGAAGGAAAACTGGTGGTACTACTGAAGGAGAGATTAGGATTGGCGGGTACCCAAAGGTTCAAGATACATTTG CTAGAATATCCGGTTATTGTGAGCAAGCAGACATACATTCCCCTCAAATAACTATAGAAGAATCTGTAGTTTTCTCTGCTTGGTTGCGGCTCCCATCTGT CATTGATCCGAAAACTAAATTTGATTTTGTCAATGAAGTCCTTGAAACTATTGAGCTTGATGGGATTAAGGATTCTTTAGTAGGCATTCCAGGAATTAGT GGTTTATCAACTGAGCAGCGTAAACGACTGACTATAGCTGTGGAGCTAGTTTCCAATCCATCTATAATATTTATGGATGAGCCCACATCTGGCTTAGACG CAAGAGCAGCTGCGATTGTTATGAGAGCAGCGAAGAACATAGTTGAAACGGGAAGAACAGTTATTTGCACAATCCACCAGCCAAGTATTGATATCTTTGA GGCATTTGATGAGTTGATTCTAATGAAAACTGGAGGACGCCTTATCTATTCTGGACAGCTGGGTCAGCGGTCAAGCGCACTCATTGAGTATTTTGAGAAA ATTCCTGGAGTGCCTAAGATTAAGGACAACTATAATCCGGCAACATGGATGTTAGAGGTTACTTCTCAATCTGCAGAGGCTGAACTTGGGGTAGATTTTG GACAAATTTATGAAGGGTCCACCTTGTACAAGGAGAACAGGAAGCTGGTTGAGCAATTGAGTTCAAAAACTCCTGGTTCAAAGGACTTGCATTTTCCTAC CCAATTTTCACAGAATGGCTGGGAACAGCTCAAAGCATGCCTCTGGAAACAGAACTTGTCTTATTGGAGAAGTCCTCCGTACAATCTGTTGCGCATTTCT TTCATATCTTCTGGAGCTCTTTTGTTTGGCGTACTGTTCTGGCAGCAAGGAAAGAATATAAACAACCAACAAGACTTGTTCAGTATGCTTGGTGCAATGT ACACGGCCATAATGTTCTTTGGAATAAACAATTGTTCTACAGTTCTGCCTTATGTTTCAGCAGACCGGACAGTTCTGTACAGGGAAAGATTTGCTGGAAC GTACTCTGCATGGGCCTATTCATTAGCACAGTTGTTAGTTGAGGTTCCTTACTTGTTCGCTCAATCAGTTATTTATGTGATTGTCACATATCCTATGATC GGTTACTCCTTGTCTGCCTATAAGATATTCTGGTCTCTCTATGGGATGTTCTGCACGTTGCTTTGCTTCAACTACCTGGGGATGCTGCTCATATCAGTGA CACCAAATGCTCAAGTGGCTATCATTTTATGCTCAATCGCATTCACAACAATGAACTTTTTCGCTGGATTCATTGTACCGAAAAAGCGTATTCCAATGTG GTGGATTTGGTTGTATTATATTTGTCCCACATCTTGGGCATTAGAGGGTATGTTCACCTCGCAATATGGAGATCTGGACAAAGAAATATCAGTCTTCGGC GAAACCAAGACTGCCTCAGCTTTTATAGAGGATTACTTCGGGTATCGTCAAGACTTTTTGGGTGTTGTTGGTCTTGTACTTATCATCATTCCCATTGTCA TCGCTTCTCTTTTCACTTATTTTATTGGAAAATTGAACTTCCAGAGAAGGTAA
AA sequence Show only first row Show all	>Potri.008G099000.1 pacid=42806895 polypeptide=Potri.008G099000.1.p locus=Potri.008G099000 ID=Potri.008G099000.1.v4.1 annot-version=v4.1 MAQLAGPDEIESFRIELAEIERNIRTSFRSQVPSFHSVSNGSSEHIRDADDEDMLQWATVERLPTFERITTALFEEQDCTAANGDAKGKTIVNVSKLGAQ ERHVFIEKLIKHIENDNLRLLRRLKQRIDKVGVKFPTVEVRYRNLCVEAECELVHGKPLPTLWNTAKSLLSGFASLSCSKRRTKAGILKDAGGILKPGRM TLLLGPPGCGKTTLLLALSGKLSHALEVSGEISYNGHSLEEFVPQKSSVYISQHDLHIPEMTVRETIDFSARCQGIGSRADIMMEVIRREKQAGILPDPD VDAYMKAISVEGLKSTLQTDYILKILGLDICSDIMVGDAMRRGISGGQKKRLTTGEMIVGPVKALFMDEISNGLDSSTTFQIMSCMQHLAHITDATVLIS LLQPAPETFDLFDDIILMAEGKIVYHGPRSTISKFFEDCGFRCPERKGIADFLQEVISRKDQGQYWHRTEQLHSYIPVDQFVKKFKESQFGEKLDKELSR PFDKSKSHKNALTFSKYSLTKWELFKACSMREFLMMKRNSFIYVLKSIQLVIVASICMTVLLRTRMGVDEIHANYYMGALFYALVILVVDGVPELQMTTS RLAVFYKQRELYFYPAWAYAIPAAILKVPLSLMEAFVWTALTYYVIGYSPELERFLRQFLILFLLHLASLSMFRFVASIFQTAVASMTAGSIAIMGCLLF GGFVIPKPSMPAWLQWGFWISPITYGEIGLTTNEFLAPRWEKIVSGNTTIGQQTLESRGLNFHGYFYWISVGALMGLALLFNIGFTLALTFLKPPGNSRA IISYERYYQLQGRKDDVDGFDEDKKLHSANESSPGPKKGRMVLPFEPLVMTFKDVQYYVDTPLEMRKRGVLQKKLQLLSDITGAFRPGILTALMGVSGAG KTTLMDVLSGRKTGGTTEGEIRIGGYPKVQDTFARISGYCEQADIHSPQITIEESVVFSAWLRLPSVIDPKTKFDFVNEVLETIELDGIKDSLVGIPGIS GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAAKNIVETGRTVICTIHQPSIDIFEAFDELILMKTGGRLIYSGQLGQRSSALIEYFEK IPGVPKIKDNYNPATWMLEVTSQSAEAELGVDFGQIYEGSTLYKENRKLVEQLSSKTPGSKDLHFPTQFSQNGWEQLKACLWKQNLSYWRSPPYNLLRIS FISSGALLFGVLFWQQGKNINNQQDLFSMLGAMYTAIMFFGINNCSTVLPYVSADRTVLYRERFAGTYSAWAYSLAQLLVEVPYLFAQSVIYVIVTYPMI GYSLSAYKIFWSLYGMFCTLLCFNYLGMLLISVTPNAQVAIILCSIAFTTMNFFAGFIVPKKRIPMWWIWLYYICPTSWALEGMFTSQYGDLDKEISVFG ETKTASAFIEDYFGYRQDFLGVVGLVLIIIPIVIASLFTYFIGKLNFQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G099000 [exp]	0	1
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	1.73	0.8973
					Potri.005G162201 [exp]	2.44	0.9016
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.015G018900 [exp]	3.00	0.8723
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	4.24	0.8985
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	5.29	0.8876
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111800 [exp]	5.47	0.8688
AT1G20670			DNA-binding bromodomain-contai...		Potri.019G132601 [exp]	7.00	0.8822
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	7.41	0.8876
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	7.74	0.8328
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	8.48	0.8856

Compare expression of checked genes

Potri.008G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.