Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17350 331 / 3e-114 unknown protein AT5G50290 147 / 3e-42 unknown protein AT1G11915 117 / 1e-30 unknown protein AT1G10380 115 / 4e-30 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152900 [exp] 509 / 0 AT3G17350 339 / 4e-117 unknown protein Potri.015G078700 [exp] 144 / 3e-41 AT5G50290 387 / 4e-136 unknown protein Potri.010G158500 [exp] 117 / 6e-31 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 117 / 1e-30 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.011G007900 [exp] 116 / 4e-30 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 113 / 5e-29 AT1G11915 360 / 1e-124 unknown protein Potri.007G094800 [exp] 99 / 4e-24 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G040500 [exp] 95 / 1e-22 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.004G096900 [exp] 45 / 6e-05 AT5G38210 557 / 0.0 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043098 [exp] 392 / 1e-137 AT3G17350 334 / 7e-115 unknown protein Lus10001236 [exp] 152 / 7e-44 AT5G50290 368 / 2e-128 unknown protein Lus10042105 [exp] 151 / 1e-43 AT5G50290 366 / 9e-128 unknown protein Lus10037078 [exp] 119 / 1e-30 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10038443 [exp] 106 / 3e-26 AT1G11915 365 / 2e-126 unknown protein Lus10036687 [exp] 102 / 3e-25 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10023362 [exp] 101 / 2e-24 AT1G11915 360 / 2e-124 unknown protein Lus10037235 [exp] 100 / 2e-24 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10036906 [exp] 96 / 2e-23 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037236 [exp] 74 / 3e-16 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G099800.1 pacid=42807185 polypeptide=Potri.008G099800.1.p locus=Potri.008G099800 ID=Potri.008G099800.1.v4.1 annot-version=v4.1 ATGCATTCCACAATGGCACCGCTCATCACTTTCAAGCTGTCCATGTTCATAATCCTAACACTTCAACCACCACCAACCCTTTCTCTCACTCCCTGCAGAA CCTCCTGTGGCAGCATTGCCATAAACTATCCCTTCGGCATCGATGATGGGTGCGGCGCACCACAGTTTCGGCACATGCTGAACTGCAGCACTGACTTGTT TTTTTTAACCCCTTCGGGTGATTACAAGGTCCAACACATAGATTATGACAAAAAAACAATGACTATATATGATCCTGCTATGTCAACCTGCTCCATTCTA CAACCCCATCATGATTTTATCATGACAGACATTCAATCTGTTACTATCTCTCCAACGCCAGACACTGTTTTTGCTCTTCTTAATTGCTCCATCGACTCTC CGGTACTTAACCATTACAAAAACCTTTGTTTCAGCTTCTCTGGTCACTCTTGTGATGAATTATATGGCGCGTGCAATGCTTTTAGAGTTTTCCATTTGTT AACTAATAGTTCTCCACCCTGTTGTTTTACGGGATATGATACTGTGAAGTTTATGAGCATGAATATTTTGGACTGCACGCATTATACTACTGTGATTAAT ACTGATAGTTTGATGGGTATTGTACCTTCGGATTGGGTTTATGGGATCAAACTTTCTTATAGTGTGCCTGAAACTGGTTGTGAACGGTGCTCCCAATCTG GTGGGACTTGTGGGTATGATACTGAGACAGAAGGAATGATGTGTCTGTGCTCGAGCTCTTCAAATTATACTAGAGAATGTGCTGGAGGCAGTCTTACAGC AGGTGATCATAGAAGCAGCCATTCTCCGTGGACGTTCTTCAATGTTGCAATTTTACTTGTTTTGAGTTCGTTACCAGTGATTTGA
AA sequence Show only first row Show all	>Potri.008G099800.1 pacid=42807185 polypeptide=Potri.008G099800.1.p locus=Potri.008G099800 ID=Potri.008G099800.1.v4.1 annot-version=v4.1 MHSTMAPLITFKLSMFIILTLQPPPTLSLTPCRTSCGSIAINYPFGIDDGCGAPQFRHMLNCSTDLFFLTPSGDYKVQHIDYDKKTMTIYDPAMSTCSIL QPHHDFIMTDIQSVTISPTPDTVFALLNCSIDSPVLNHYKNLCFSFSGHSCDELYGACNAFRVFHLLTNSSPPCCFTGYDTVKFMSMNILDCTHYTTVIN TDSLMGIVPSDWVYGIKLSYSVPETGCERCSQSGGTCGYDTETEGMMCLCSSSSNYTRECAGGSLTAGDHRSSHSPWTFFNVAILLVLSSLPVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17350			unknown protein		Potri.008G099800 [exp]	0	1
AT3G17350			unknown protein		Potri.010G152900 [exp]	1.00	0.9465
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	2.00	0.9389
					Potri.016G052301 [exp]	3.16	0.9310
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	3.74	0.9265
AT2G20515			unknown protein		Potri.005G224600 [exp]	8.60	0.8921
AT5G16250			unknown protein		Potri.010G179300 [exp]	9.48	0.9374
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	10.90	0.9101
					Potri.006G055900 [exp]	11.31	0.9265
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Potri.013G028900 [exp]	11.40	0.8475
AT5G49525			unknown protein		Potri.005G011400 [exp]	11.78	0.8449

Compare expression of checked genes

Potri.008G099800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.