Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48130 322 / 3e-111 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT5G06290 94 / 6e-22 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 92 / 3e-21 Thioredoxin superfamily protein (.1) AT3G26060 47 / 8e-06 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072100 [exp] 92 / 1e-21 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.006G204900 [exp] 90 / 1e-20 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.006G137500 [exp] 44 / 7e-05 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.018G063300 [exp] 44 / 7e-05 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018342 [exp] 378 / 4e-133 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10017112 [exp] 375 / 5e-132 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10008810 [exp] 122 / 2e-34 AT1G48130 107 / 2e-30 1-cysteine peroxiredoxin 1 (.1) Lus10021295 [exp] 94 / 6e-22 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10016969 [exp] 94 / 7e-22 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10034892 [exp] 44 / 5e-05 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10033424 [exp] 42 / 0.0003 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00578 [poplar] [flax] AhpC-TSA AhpC/TSA family CL0172 [poplar] [flax] PF10417 [poplar] [flax] 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin
Representative CDS sequence Show only first row Show all	>Potri.008G099900.3 pacid=42808066 polypeptide=Potri.008G099900.3.p locus=Potri.008G099900 ID=Potri.008G099900.3.v4.1 annot-version=v4.1 ATGGATATGCTGCCACGTAGGAATTTAGAGGAAGATAATCCCGTTTTACTTGTGCCCGTTGCAGAATTGCTTGAGTCAAGAGACAAACGACAAGTCACAA ACATAGAGCAAGATTGGCAAATAAGCACGACTAACCAAACGTGTGAAACCTGCCCACGTGGATGTATGGCCCGTCCTCAAAAAACCACTCTGCACGCACT TAACCGCTCAAGCCATAGCCACGACACATGCCACGTTCTCTCCATGCAAACACCCTCTCAAGTCTCAACTCTTTTAAATCCCCATCTTCCAAATTCTTAC CTCACAATCACAAAAAAACAGAGAAAACAGACTATTTCTCACACTTTGACAATGCCAGGCCTTACTATTGGAGACAGTGTCCCAAACCTTGAAGTTGAGA CCACTCATGGAGTTATCAAGCTTCATGACTACATAGATACCTGGACCATTCTCTTCTCGCACCCAGGTGATTTCACACCAGTTTGTACTACCGAGCTTGG AAAGATGGCTGCTCATGCTCCAGAATTTGCTAAGAGAGGGGTCAAACTGTTGGGATTGTCCTGTGATGATGTTTCGTCTCATGCTGAGTGGGTCAAGGAC ATTGAAGCCTACACTCCTGGATGCAAGGTTACATATCCAATAATTGCAGATCCTAAGAGGGAACTCATTAAGATACTTAATATGGTGGATCCAGACGAGA AAGACTCTTCAGGGCACAATGTTCCATCTCGAGCTCTGCATATTGTTGGTGCCGACAAGAGGATCAAGTTGAGCTTTCTGTACCCAGCAAGCACTGGCCG CAACATGGATGAAGTAGTGAGGGTCTTAGATTCTCTAGAGAGGTCATCAAAGAACAAGATTGCGACTCCGGCAAATTGGAAGCCAGGTGAAGATGTCGTC ATCTCCCCTAGTGTCTCTGATGAGGAAGCTAAAAAGTTGTTTCCTCAGGGATTCAAGACTGTTGGAATTCCATCTAATAAAGGATATCTCCGCTTCACCA ATGTTGATCATTAG
AA sequence Show only first row Show all	>Potri.008G099900.3 pacid=42808066 polypeptide=Potri.008G099900.3.p locus=Potri.008G099900 ID=Potri.008G099900.3.v4.1 annot-version=v4.1 MDMLPRRNLEEDNPVLLVPVAELLESRDKRQVTNIEQDWQISTTNQTCETCPRGCMARPQKTTLHALNRSSHSHDTCHVLSMQTPSQVSTLLNPHLPNSY LTITKKQRKQTISHTLTMPGLTIGDSVPNLEVETTHGVIKLHDYIDTWTILFSHPGDFTPVCTTELGKMAAHAPEFAKRGVKLLGLSCDDVSSHAEWVKD IEAYTPGCKVTYPIIADPKRELIKILNMVDPDEKDSSGHNVPSRALHIVGADKRIKLSFLYPASTGRNMDEVVRVLDSLERSSKNKIATPANWKPGEDVV ISPSVSDEEAKKLFPQGFKTVGIPSNKGYLRFTNVDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Potri.008G099900 [exp]	0	1
AT4G10950			SGNH hydrolase-type esterase s...		Potri.009G157800 [exp]	2.44	0.8415
AT5G28470			Major facilitator superfamily ...		Potri.006G091600 [exp]	17.00	0.7138
					Potri.011G130901 [exp]	19.89	0.7835
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G078400 [exp]	27.54	0.7745	UF3.3
AT5G64090			unknown protein		Potri.003G020500 [exp]	33.40	0.7948
AT2G04032		ZIP7	zinc transporter 7 precursor (...		Potri.010G134300 [exp]	48.74	0.7465	Pt-ZIP7.2
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124200 [exp]	64.42	0.7550
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.010G109200 [exp]	83.12	0.7681	Pt-CEL1.2
					Potri.008G182733 [exp]	161.83	0.7162
					Potri.001G360550 [exp]	162.49	0.7141

Compare expression of checked genes

Potri.008G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.