Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15640 339 / 3e-116 Mitochondrial substrate carrier family protein (.1) AT5G26200 252 / 4e-82 Mitochondrial substrate carrier family protein (.1) AT1G72820 250 / 4e-81 Mitochondrial substrate carrier family protein (.1) AT1G07030 110 / 7e-28 Mitochondrial substrate carrier family protein (.1) AT2G30160 103 / 4e-25 Mitochondrial substrate carrier family protein (.1) AT1G34065 100 / 4e-24 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G42130 96 / 6e-22 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G32400 91 / 2e-20 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G11440 89 / 2e-19 Mitochondrial substrate carrier family protein (.1) AT4G39460 85 / 1e-18 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098500 [exp] 314 / 1e-106 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 310 / 1e-104 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.018G050300 [exp] 235 / 4e-75 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 226 / 7e-72 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.010G152501 [exp] 122 / 2e-34 ND / Potri.016G125200 [exp] 117 / 4e-30 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 110 / 7e-28 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 110 / 1e-27 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 95 / 3e-22 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041498 [exp] 318 / 7e-108 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 317 / 7e-106 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 311 / 6e-105 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 260 / 5e-86 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 207 / 3e-64 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10025015 [exp] 196 / 6e-60 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 193 / 8e-59 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 100 / 4e-24 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 100 / 7e-24 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 93 / 4e-21 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.008G100100.2 pacid=42806073 polypeptide=Potri.008G100100.2.p locus=Potri.008G100100 ID=Potri.008G100100.2.v4.1 annot-version=v4.1 ATGGCTGTCGAAACGGAAGTTACAAGTGTTACTGAACTGGCTCTTGCTGATACTGACATCAATTGGGCCAGGCTGGACAAGACGAAGTTTCATATTATTG GTGCTGTCCTCTTTACTGTTCAGCAAGGCTTACTTCACCCAACAGCAGTTGTGAAGACTAGAATGCAAGTAGCAGATTCTGGGCTCTCTCACATGGGTGG AATATCCGTAGCTAAACACATATTGAGGAACGATGGTATTCCAGGTCTTTTTCGAGGTTTTGGCACCTCTGCTATTGGAGCATTACCTGGTAGAGTTCTT TCTTTGACAGCTCTTGAAGTGTCAAAAGATATGATGTTCAAATACACTGAAGCTTTAGATATGCCTGAAGCAACACGTGTTGGTATTGCAAATGGAGTTG CAGGCATGTTGTCAAATCTAGTTTCTTGTGTGTACTATGTGCCCTTGGATGTGATATGCCAAAGACTAATGGTGCAAGGGCTTCCCGGGGTTGCATCTTA TAAAGGGCCATTTGATGTCATGTGTAAAGTGATGAAGACTGAAGGGTTCCGTGGTTTATATAGAGGTTTTGGATTGACAGCTGTAACGCAGCCACCGGCA TCGGCGCTTTGGTGGGGTACCTATGGTGCTGCCCAGCACATCATTTGGAGGAGCATGGGCTATAGGGATGACATTGACAAGAAACCATCTCATTTGGAAA TGGTGACAGTTCAGGCTATGGCAGGAACAGTGGCTGGTGCTTGTTCCTCAATTATCACTACTCCCATGGATACCATAAAGACACGGCTGCAGGTTATGGA TAATTATGGTTCTGGAAGACCTTCAGTACTCAAGACAACAAAGACTCTACTCAAGGAAGATGGATGGCGGGGCTTCTACAGAGGTTTCGGACCCCGTTTC TTAAATATGTCACTCTATGGAACTACAATGATCGTTACCTATGAACTGATAAAGAGATTATCTATCAAGCAAGGATGA
AA sequence Show only first row Show all	>Potri.008G100100.2 pacid=42806073 polypeptide=Potri.008G100100.2.p locus=Potri.008G100100 ID=Potri.008G100100.2.v4.1 annot-version=v4.1 MAVETEVTSVTELALADTDINWARLDKTKFHIIGAVLFTVQQGLLHPTAVVKTRMQVADSGLSHMGGISVAKHILRNDGIPGLFRGFGTSAIGALPGRVL SLTALEVSKDMMFKYTEALDMPEATRVGIANGVAGMLSNLVSCVYYVPLDVICQRLMVQGLPGVASYKGPFDVMCKVMKTEGFRGLYRGFGLTAVTQPPA SALWWGTYGAAQHIIWRSMGYRDDIDKKPSHLEMVTVQAMAGTVAGACSSIITTPMDTIKTRLQVMDNYGSGRPSVLKTTKTLLKEDGWRGFYRGFGPRF LNMSLYGTTMIVTYELIKRLSIKQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15640			Mitochondrial substrate carrie...		Potri.008G100100 [exp]	0	1
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.014G192800 [exp]	2.00	0.8471
AT1G09157			Protein of unknown function (D...		Potri.010G168400 [exp]	6.92	0.7299
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.006G266100 [exp]	7.74	0.7759
AT5G62760			P-loop containing nucleoside t...		Potri.015G064600 [exp]	9.00	0.7849
AT2G26400		ARD, ATARD3	acireductone dioxygenase 3 (.1...		Potri.010G082101 [exp]	13.63	0.7261
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	14.96	0.7738
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	15.58	0.7733
AT5G41685			Mitochondrial outer membrane t...		Potri.018G146602 [exp]	17.54	0.7306
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	18.30	0.7803
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	19.44	0.7468

Compare expression of checked genes

Potri.008G100100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.