Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48100 653 / 0 Pectin lyase-like superfamily protein (.1) AT1G02460 525 / 0 Pectin lyase-like superfamily protein (.1) AT1G56710 481 / 4e-168 Pectin lyase-like superfamily protein (.1) AT4G01890 466 / 1e-161 Pectin lyase-like superfamily protein (.1) AT5G14650 369 / 3e-124 Pectin lyase-like superfamily protein (.1) AT1G60590 360 / 3e-119 Pectin lyase-like superfamily protein (.1) AT1G10640 359 / 5e-119 Pectin lyase-like superfamily protein (.1) AT3G26610 319 / 2e-104 Pectin lyase-like superfamily protein (.1) AT1G70500 309 / 2e-100 Pectin lyase-like superfamily protein (.1) AT1G23460 306 / 2e-99 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152000 [exp] 815 / 0 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 559 / 0 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 557 / 0 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 555 / 0 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 548 / 0 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 370 / 7e-124 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 364 / 3e-121 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 356 / 6e-118 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 313 / 1e-101 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037834 [exp] 646 / 0 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 643 / 0 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 527 / 0 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 526 / 0 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 372 / 3e-124 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 364 / 4e-121 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 364 / 5e-121 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 350 / 4e-116 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 319 / 4e-104 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 294 / 4e-94 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.008G100500.1 pacid=42807657 polypeptide=Potri.008G100500.1.p locus=Potri.008G100500 ID=Potri.008G100500.1.v4.1 annot-version=v4.1 ATGGAGATCATTCGTGGTTTTTTCGCCATTTGCATTGGGGTGTCCCTTCTGCTTTACAATTCAAGCAATGTAGAAGGAAGGTACCATTACCATAAGCCAA AGAACAAGAGCTCCAACAATATAGGGTCCCCCGTTTCTCCACCCCCTGATGATACCCCGGATCCTCAAAACCCCATTGCCCCTTCATCCCCTTCTAATCC TCCTTCAATCCCTTCAGACCCTTATCCGAAAGATCCTGGAAATACCAGTTCAGGCTGCATTTTCAATGTAATGGATTATGGGGCAGTTGGTGATGGCTCC ACTGACGACACCGATGCATTCAGGCAGGCTTGGAAAGAAGCTTGTGGAGTGGAATCTGGTGTTATTCTGGCTCCTTCAGGTCATTCTTTCATGATCACCT CAACTATTTTCACAGGTCCATGCAAGCCAGGACTAGTGTTTCAGGTGGATGGGTACCTGATGCCGCCAGATGGACCGGATTGCTGGCCAGAAAAAGATAG CACAAAGCAATGGCTTGTGTTTTATCGACTTGACGGTATGACTCTCACTGGAAAAGGAACCATTGAAGGAAATGGAGAGAAGTGGTGGGATCTACCCTGC AAACCTCACAGGAGCCCAAATGGATCGACATCAAAAGGACCGTGTGATAGCCCTGCTTTAATTCGCTTTTTCATGAGCTCCAATTTGGCAGTCAGTGGCT TAAGAATCCAGAACAGTCCCCAATTCCATATGAAATTTGATGGCTGTGAAGGAGTTTTGATAGAAAAACTGTCCATATCTTCCCCTAAACTTAGCCCCAA TACTGATGGGATTCACATAGAGAACACTAAGGCTGTTGGCATATACGACTCTTCCATTAGCAACGGTGACGATTGCATATCGATCGGGACAGGATGCTCG AATGTTGATATAGATGGTCTCACCTGTGGTCCCAGTCACGGGATTAGCATTGGAAGCCTGGGAGTACACCATTCCCAGGCATGTGTAAGGAACATAACCG TCCGAAATTCAGTAATAAAAGAATCAGACAATGGACTGAGGATCAAGACATGGCAAGGCGGCACGGGTTGCGTATCCGACATAAACTTTGAAAACATCCA AATGGAGAATGTTAGGAACTGCATGAACATAGACCAATACTACTGCCTATCGAAGGCTTGTCTAAATGAGACCTCAGCTGTCTATGTCACAGGCGTTACA TACAGGAACATTAAGGGCACATATGATGTTAGAACCCCACCAATACACTTTGCTTGTAGTGACACAGTAGCCTGCACCGATATAATTCTATCAGAGGTTG AGCTTCTCCCTGAAGAAGGTGAGTTGATGGATGATCCCTTTTGTTGGAATGCCTATGGAACTCAAGAAACAGTGACTATTCCTCCTATAAATTGCTTAAG AGAAGGACAGCCTGAGAGTCAAGGGGAGGTCTCCTCTGTTGGTTGCTGA
AA sequence Show only first row Show all	>Potri.008G100500.1 pacid=42807657 polypeptide=Potri.008G100500.1.p locus=Potri.008G100500 ID=Potri.008G100500.1.v4.1 annot-version=v4.1 MEIIRGFFAICIGVSLLLYNSSNVEGRYHYHKPKNKSSNNIGSPVSPPPDDTPDPQNPIAPSSPSNPPSIPSDPYPKDPGNTSSGCIFNVMDYGAVGDGS TDDTDAFRQAWKEACGVESGVILAPSGHSFMITSTIFTGPCKPGLVFQVDGYLMPPDGPDCWPEKDSTKQWLVFYRLDGMTLTGKGTIEGNGEKWWDLPC KPHRSPNGSTSKGPCDSPALIRFFMSSNLAVSGLRIQNSPQFHMKFDGCEGVLIEKLSISSPKLSPNTDGIHIENTKAVGIYDSSISNGDDCISIGTGCS NVDIDGLTCGPSHGISIGSLGVHHSQACVRNITVRNSVIKESDNGLRIKTWQGGTGCVSDINFENIQMENVRNCMNIDQYYCLSKACLNETSAVYVTGVT YRNIKGTYDVRTPPIHFACSDTVACTDIILSEVELLPEEGELMDDPFCWNAYGTQETVTIPPINCLREGQPESQGEVSSVGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48100			Pectin lyase-like superfamily ...		Potri.008G100500 [exp]	0	1
AT1G48100			Pectin lyase-like superfamily ...		Potri.010G152000 [exp]	1.00	0.8657
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Potri.008G052601 [exp]	2.44	0.7363
AT3G17130			Plant invertase/pectin methyle...		Potri.008G102600 [exp]	2.82	0.7717
AT3G03770			Leucine-rich repeat protein ki...		Potri.008G014300 [exp]	4.00	0.7330
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	5.91	0.7074
AT5G19730			Pectin lyase-like superfamily ...		Potri.018G068400 [exp]	11.53	0.6684
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	14.96	0.6609	PtrWBC5-1
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	22.58	0.6067
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	26.49	0.6726
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G229600 [exp]	28.46	0.5730

Compare expression of checked genes

Potri.008G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.