Plant FIBer expression Database

Potri.008G100650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G100650.1 pacid=42807086 polypeptide=Potri.008G100650.1.p locus=Potri.008G100650 ID=Potri.008G100650.1.v4.1 annot-version=v4.1
ATGGAGAATGTGGTTAATATTTTGCTGAAGTCGGGTCATACAACTTCTATGCTTTTGAATGTTAAAGATTTTAGGCCACATGCCTGTGCTGTTCAGAAGA
TGCATATTCAGGTATGGACTAGGGAAGATGTTCTTAATGGAGGTTTTAGCATCCGCTATTTAAAGAAGCACCTGCAGAGACTATTGGAACAGGGTTGCTT
GTCAGAAGTGCAATTTTACTTTGATACAAGGGGAATCACTATGGAGAGCACATCTTCATGTTTGGTGATTGAAGCTGTACAGAATACCTTCCACAACTTG
ATGTGGTTGCTCCTAGAATGTACATGTTTTTTTTTTCCTATCATACATATTTCTTCTGTGTTCTTTGTACATAGAATTTTTTGCAGAAGGGACAGTCATC
TGGGCTGGCCACCGGAAAATTGGTCTCGCTTGGAGACCCAAAGTTTCTGTGTAAATAGAAAGCGATACACCTCCTGTCATCTCCGGTGCTTTCTTCTTCT
TTTTTTTTTGGACTGGGGAAGTTGCATTCGTGTTAAATCGAATACCTCTGATGAATATTCGAGTGCAAAATAA
AA sequence
>Potri.008G100650.1 pacid=42807086 polypeptide=Potri.008G100650.1.p locus=Potri.008G100650 ID=Potri.008G100650.1.v4.1 annot-version=v4.1
MENVVNILLKSGHTTSMLLNVKDFRPHACAVQKMHIQVWTREDVLNGGFSIRYLKKHLQRLLEQGCLSEVQFYFDTRGITMESTSSCLVIEAVQNTFHNL
MWLLLECTCFFFPIIHISSVFFVHRIFCRRDSHLGWPPENWSRLETQSFCVNRKRYTSCHLRCFLLLFFLDWGSCIRVKSNTSDEYSSAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G100650
[exp]
0 1
AT5G62740 AtHIR4, ATHIR1 hypersensitive induced reactio... Potri.012G070500
[exp]
9.00 0.8213
AT5G45360 F-box family protein (.1) Potri.004G236200
[exp]
10.09 0.7155
AT2G46170 Reticulon family protein (.1.2... Potri.014G091200
[exp]
13.07 0.7882
AT5G18940 Mo25 family protein (.1.2) Potri.010G028700
[exp]
13.41 0.8106
AT5G50870 UBC27 ubiquitin-conjugating enzyme 2... Potri.015G103400
[exp]
17.46 0.7687
AT2G02760 ATUBC2 ubiquitin-conjugating enzyme 2... Potri.019G039200
[exp]
19.23 0.7608 Pt-UBC1.2,HUPB903
AT1G55300 TAF7 TBP-associated factor 7 (.1.2) Potri.001G006300
[exp]
26.15 0.7431
AT5G16490 RIC4 ROP-interactive CRIB motif-con... Potri.019G053300
[exp]
29.08 0.7675
AT1G36980 unknown protein Potri.005G171901
[exp]
29.29 0.7261
AT1G19910 AVA-2PE, ATVHA-... VACUOLAR-TYPE H+ ATPASE C2, AT... Potri.007G014600
[exp]
30.52 0.7863

Potri.008G100650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.