Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48040 376 / 4e-129 Protein phosphatase 2C family protein (.1) AT3G62260 360 / 8e-123 Protein phosphatase 2C family protein (.1.2) AT3G17250 350 / 2e-118 Protein phosphatase 2C family protein (.1) AT2G33700 273 / 6e-89 Protein phosphatase 2C family protein (.1) AT3G51470 263 / 4e-85 Protein phosphatase 2C family protein (.1) AT2G25620 230 / 5e-72 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT4G31750 140 / 1e-38 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 136 / 2e-36 Protein phosphatase 2C family protein (.1) AT5G24940 136 / 6e-36 Protein phosphatase 2C family protein (.1) AT2G20630 121 / 1e-31 PIA1 PP2C induced by AVRRPM1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151500 [exp] 611 / 0 AT1G48040 418 / 8e-146 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 392 / 5e-135 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 354 / 2e-120 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2) Potri.002G007500 [exp] 278 / 1e-90 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G253700 [exp] 275 / 1e-89 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 270 / 1e-87 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 261 / 3e-84 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 234 / 9e-74 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 232 / 1e-72 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037832 [exp] 502 / 1e-178 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10017106 [exp] 496 / 2e-176 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10038058 [exp] 336 / 4e-113 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10009993 [exp] 322 / 9e-108 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10030731 [exp] 272 / 3e-88 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 272 / 5e-88 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 267 / 5e-86 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 265 / 5e-85 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 237 / 7e-75 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 236 / 1e-74 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF13672 [poplar] [flax] PP2C_2 Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.008G100700.5 pacid=42806850 polypeptide=Potri.008G100700.5.p locus=Potri.008G100700 ID=Potri.008G100700.5.v4.1 annot-version=v4.1 ATGAAGGAAACAACCGAGATAATGTGCAATGTTATTGATGTGCAGTATCAACTTTGCCTGGCTAAAGATCAGCAGAACATGGCTCCTTCAACTCCGGTTT TTGATTCGATTTCCACAGAAGTCTCGCGTTTTGAGACGGGGGCAATTTGTTCGGTCCTGAATGGTGTCATAAGGCGATTGATTAGTCAAGGATTACAAGT CGTGGAGTCTTCTGCTGCCAAGCTTTTTCCTCGCATCCGTTCTGGTAGCTATGCAGATATTGGATCAAGGCCGTCTATGGATGATGAACACGTTAGGATT GATGATCTATCTGCCCATCTGGGTTCTTATTTCAAGTGTCCGAGCTCTTTTTATGCAGTTTTTGATGGTCATGGAGGGCCTGATGCAGCTGCTTATGTCA AGAGGAATGCTGTGAGGTTGTTTTTTGAAGATGTTCACTTGCCACAAACATCTGATGTTGATGATGTCTTCCTAAGAGCACTGTTAAATTCCCATAGGGA AGCGTTTTTACAGGCTGACTCTGCATTGGCTGATAAAAGCATTGTTAGCAGTTCATGTGGAACAACAGCATTGACTGCCCTAGTTCTTGGAAGGCATTTA GTGGTTGCAAATGCTGGTGACTGTCGAGCTGTTCTCTGTAGGAAAGGGGTAGCCGTTGATGTGTCTCAAGATCACAAGCCTTCTTATTTGCCAGAACGCA GACGGGTTGAGGAGTTGGGTGGTCGTGTTCAAGGTGAATATCTTAATGGTCCTTCTGTTACTCGAGCCCTTTCTGTTACTCGAGCCCTTGGAGATTGGGA TTTTAAGCTTCCAGTTGGCTCCACATCACCTCTCACTGCTGAGCCAGAGGTTCAACAGTTTATGTTAACAGAGGCTGATGAATTCTTGATTATTGGTTGT GATGGTATCTGGGACGTTATGTCAAGCCAGCATGCTGTCAGCCTTGTCCGTCGTGGGCTTAGGCGGCATGATGACCCAGAACTTAGTGCCAGAGAACTAG TCATGGAAGCATCACGCCTCCATTCAGCTGATAATCTCACTGCTGTTGTTGTCTGCTTCGCTTCACCTAATCCTGTTGAGTCATGCGAACCTCGAAGCCG AAGGTTGAGGTTCTTCTGTCTCTCTGAGGAGGCTCGGAGCAAGCTGAAGAGCTTGTTCGAAGGCAATTGA
AA sequence Show only first row Show all	>Potri.008G100700.5 pacid=42806850 polypeptide=Potri.008G100700.5.p locus=Potri.008G100700 ID=Potri.008G100700.5.v4.1 annot-version=v4.1 MKETTEIMCNVIDVQYQLCLAKDQQNMAPSTPVFDSISTEVSRFETGAICSVLNGVIRRLISQGLQVVESSAAKLFPRIRSGSYADIGSRPSMDDEHVRI DDLSAHLGSYFKCPSSFYAVFDGHGGPDAAAYVKRNAVRLFFEDVHLPQTSDVDDVFLRALLNSHREAFLQADSALADKSIVSSSCGTTALTALVLGRHL VVANAGDCRAVLCRKGVAVDVSQDHKPSYLPERRRVEELGGRVQGEYLNGPSVTRALSVTRALGDWDFKLPVGSTSPLTAEPEVQQFMLTEADEFLIIGC DGIWDVMSSQHAVSLVRRGLRRHDDPELSARELVMEASRLHSADNLTAVVVCFASPNPVESCEPRSRRLRFFCLSEEARSKLKSLFEGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48040			Protein phosphatase 2C family ...		Potri.008G100700 [exp]	0	1
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	10.48	0.8305
AT5G47830			unknown protein		Potri.014G024500 [exp]	13.74	0.8716
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Potri.002G102600 [exp]	17.20	0.8620
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104200 [exp]	19.74	0.7672
AT2G15560			Putative endonuclease or glyco...		Potri.009G100600 [exp]	20.56	0.8522
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	21.21	0.8332	Pt-LEN1.1
AT2G07820			unknown protein		Potri.007G061701 [exp]	22.80	0.7567
AT3G12300			unknown protein		Potri.003G193900 [exp]	28.24	0.7553
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.006G268000 [exp]	29.93	0.7896
					Potri.006G160950 [exp]	33.10	0.8517

Compare expression of checked genes

Potri.008G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.