Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LPD1,Pt-LPD.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17240 868 / 0 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT1G48030 866 / 0 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G16950 257 / 9e-79 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 251 / 3e-76 dihydrolipoyl dehydrogenases (.1) AT3G24170 172 / 2e-47 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 161 / 3e-43 ATGR2, EMB2360, GR glutathione reductase (.1) AT3G09940 66 / 2e-11 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT5G03630 61 / 9e-10 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT1G63940 59 / 4e-09 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G52880 58 / 7e-09 ATMDAR1 monodehydroascorbate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151400 [exp] 884 / 0 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G142100 [exp] 257 / 7e-79 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 252 / 1e-76 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.003G178200 [exp] 179 / 2e-50 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 179 / 2e-50 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 157 / 1e-41 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.001G099600 [exp] 63 / 2e-10 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.006G114800 [exp] 62 / 6e-10 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017102 [exp] 899 / 0 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 894 / 0 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 882 / 0 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 876 / 0 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 258 / 6e-79 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 258 / 7e-79 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10011734 [exp] 181 / 8e-51 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 167 / 3e-45 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 148 / 2e-38 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10000758 [exp] 145 / 6e-38 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0063 [poplar] [flax] NADP_Rossmann PF01134 [poplar] [flax] GIDA Glucose inhibited division protein A CL0608 [poplar] [flax] Reductase_C PF02852 [poplar] [flax] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.008G100800.1 pacid=42805779 polypeptide=Potri.008G100800.1.p locus=Potri.008G100800 ID=Potri.008G100800.1.v4.1 annot-version=v4.1 ATGGCGATGGCAAGTATTGCAAGGAGAAAGGCATGCTTTTTAACAAGAAACTTATCAAATTCTTCAAGTGCTGATGCTTTCAAGTTTTCTTATTCCCTCA CTAAATTCTCTCGTGGGTTTGCTTCCTCGGGATCTGAAGAGAACGATGTAGTTGTCATCGGTGGTGGACCAGGTGGCTATGTGGCTGCTATTAAAGCTGC CCAGTTGGGTCTCAAAACTACTTGTATTGAAAAACGTGGTACTCTTGGTGGCACTTGTCTTAATGTCGGCTGTATCCCTTCAAAGGCACTTCTTCACTCA TCACACATGTTCCATGAAGCCCAACATTCATTTGCTAGCCATGGAGTGAAGTTCTCTTCTGTTGAGGTTGATTTACCTGCCATGATGGCCCAAAAAGACA AAGCTGTGTCTACCCTTACTCGAGGTATTGAAGGTTTATTAAAGAAGAACAAAGTCAACTATGTCAAAGGATATGGCAAGTTCATCTCCCCATCTGAGGT GTCAGTGGACACTATTGATGGTGCAAACACTGTTGTGAAAGGCAAGAATATCATAATTGCCACAGGTTCTGATGTAAAGTCTCTGCCTGGGATTACCATC GACGAAGAGAAAATCGTATCTTCTACTGGTGCTTTGGCTTTGAAAAAGATTCCAAAGAAACTTGTGGTCATTGGGGCAGGCTATATTGGACTTGAGATGG GCTCAGTGTGGCGCCGACTTGGTTCAGAAGTCACCGTCGTTGAGTTTGCTCCGGATATTGTCCCAAGCATGGATGGGGAAGTTCGCAAGCAATTTCAACG CATGCTTGAGAAGCAGAAGATGAAATTCATGCTCAAAACTAAGGTTGTAGGAGTTGATACTTCTGGAGATGGTGTGAAATTGACACTTGAACCAGCATCT GGCGGTGACCAGACAACTCTTGAAGCTGATGTGGTTCTTGTCTCTGCTGGTAGGACTCCATTCACTGCTGGGCTTGGACTGGACAAGATTGGTGTGGAAA CTGACAAGGTTGGACGAATTCCTGTCGATGAAAGGTTTGTGACAAATGTTTCTGGTGTCTATGCTATTGGGGATGTGATTCCTGGCCCAATGTTAGCCCA CAAGGCAGAAGAGGATGGAGTTGCTTGTGTGGAATTCATAGCAGGCAAGCACGGCCACGTTGACTATGATAAGGTCCCTGGAGTTGTATATACACATCCT GAGGTTGCATCTGTTGGTAAGACTGAAGAGCAGGTCAAGGCACTTGGTGTTGAGTACTGTGTTGGGAAGTTCCCTCTCTTGGCAAATAGTCGCGCCAAGG CAATCGACGATGCTGAAGGGCTAGTCAAGATAATTGCTGAGAAAGAGACAGACAAAATATTGGGAGTTCATATCATGGCACCTAATGCTGGAGAGCTCAT TCACGAGGCCGCGCTGGCTCTTACTTATGATGCTTCTAGTGAGGACATAGCTCGTGTATGCCACGCTCATCCAACAATGAGTGAGGCATTGAAGGAAGCT GCCATGGCCACTCATGACAAGGCCATTCACATCTAA
AA sequence Show only first row Show all	>Potri.008G100800.1 pacid=42805779 polypeptide=Potri.008G100800.1.p locus=Potri.008G100800 ID=Potri.008G100800.1.v4.1 annot-version=v4.1 MAMASIARRKACFLTRNLSNSSSADAFKFSYSLTKFSRGFASSGSEENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHS SHMFHEAQHSFASHGVKFSSVEVDLPAMMAQKDKAVSTLTRGIEGLLKKNKVNYVKGYGKFISPSEVSVDTIDGANTVVKGKNIIIATGSDVKSLPGITI DEEKIVSSTGALALKKIPKKLVVIGAGYIGLEMGSVWRRLGSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAS GGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKVGRIPVDERFVTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHP EVASVGKTEEQVKALGVEYCVGKFPLLANSRAKAIDDAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAALALTYDASSEDIARVCHAHPTMSEALKEA AMATHDKAIHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.008G100800 [exp]	0	1	LPD1,Pt-LPD.1
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.008G055400 [exp]	2.00	0.8564
AT3G58730			vacuolar ATP synthase subunit ...		Potri.001G331800 [exp]	5.00	0.7767
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	10.39	0.7883	Pt-SAL2.1
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.001G142600 [exp]	11.09	0.8433	BOU.1
AT1G42960			unknown protein		Potri.007G064100 [exp]	14.00	0.7847
AT3G56950		SIP2;1, SIP2	small and basic intrinsic prot...		Potri.016G024900 [exp]	14.49	0.7398	Pt-SIP2.1
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	14.56	0.8457
AT1G79160			unknown protein		Potri.005G096800 [exp]	22.09	0.7358
AT4G27070		TSB2	tryptophan synthase beta-subun...		Potri.001G420300 [exp]	26.38	0.8256
AT2G39725			LYR family of Fe/S cluster bio...		Potri.001G018100 [exp]	29.15	0.7483

Compare expression of checked genes

Potri.008G100800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.