Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G30510 615 / 0 ARRPS1, RPS1 ribosomal protein S1 (.1) AT1G71720 93 / 3e-20 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT3G23700 92 / 3e-20 Nucleic acid-binding proteins superfamily (.1) AT5G14580 69 / 3e-12 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G11964 65 / 7e-11 RNA binding;RNA binding (.1) AT4G29060 62 / 3e-10 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT3G03710 42 / 0.0006 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G150300 [exp] 741 / 0 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.002G063400 [exp] 103 / 1e-23 AT1G71720 514 / 2e-179 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.005G197900 [exp] 102 / 2e-23 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.018G083900 [exp] 63 / 2e-10 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.001G347900 [exp] 62 / 4e-10 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017100 [exp] 588 / 0 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 573 / 0 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10028726 [exp] 92 / 5e-20 AT1G71720 506 / 8e-177 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10028698 [exp] 89 / 6e-19 AT1G71720 516 / 0.0 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10011108 [exp] 62 / 7e-10 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10043229 [exp] 60 / 2e-09 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10022250 [exp] 59 / 7e-09 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 58 / 9e-09 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G101100.2 pacid=42807520 polypeptide=Potri.008G101100.2.p locus=Potri.008G101100 ID=Potri.008G101100.2.v4.1 annot-version=v4.1 ATGGCATCATTGGCTCAGCAGTTCGCAGGCCTAAGATGCCCGCCAATATCAATTTCAAGACTGACAGAAAGAGCAGCGACATTTTCAAAGCCAAAAAGGG CTGCGAACTTCGTTGTAACAGCAAAAGCAGTGGCAATATCAAATGCACAAACCAAAGAGAGGGAAAAACTAAAACAACTCTTCGAAGAAGCTTATGAACG ATGCCGTACTGCTCCGATGGAAGGAGTTTCTTTTACTGTTGAAGATTTTCATTCTGCTCTTGATGCTTACGACTTCAATTCTGAGATTGGCACCAGAGTT AAGGGGACAGTTTTTATGACTGATAACAATGGGGCATTGGTTGACATTACTGCAAAATCTTCGGCATATTTACCGGTGCAAGAGGCAAGCATTCACAGAA TAAAACGCCTGGAAGAAGCTGGTATAGTTCCTGGGATGAGAGAAGAGTTTGTAATCATTGGTGAAAATGAAGCTGATGATAGCTTAATCTTGAGCTTAAG GTCAATCCATTATGAACTTGCCTGGGAAAGGTGTAGGCAGCTTCAAGCTGAGGATGTCATTGTGAAAGGTAAGGTTGTTGGCGGAAACAAAGGTGGATTA GTTGCAGTTGTTGAAGGCCTCAGAGGATTTGTCCCTTTCTCACAGATATCATCGAAATCAACTCCAGAAGAACTTCTTGATAAAGAGTTTCCACTAAAAT TTGTTGATGTTGATGAGGAGCAGTCTAGACTAATCCTCAGTAACCGCAAGGCCATGGCTGACAGTCAAGCACAGCTAGGTATTGGATCAGTGGTCACTGG AACTGTTCAGAGCCTCAAACCATATGGTGCCTTCATTGATATTGGCGGAATCAATGGCCTTCTTCATGTCAGTCAGATTAGCCATGATCGTGTTTCTGAT ATTGCAACAGTTCTTCAGCCTGGTGATACTCTCAAGGTCATGATTCTAAGCCATGACCGTGAGAGAGGCCGAGTAAGTCTTTCTACCAAAAAATTGGAAC CCACTCCTGGTGATATGATTCGCAATCCAAAGCTTGTCTTCGAAAAGGCTGAGGAGATGGCCCAGACATTCAGGCAGAGAATTGCCCAGGCAGAGGCTAT GGCTCGTGCTGACATGCTAAGATTCCAGCCTGAGAGTGGGCTAACTCTCAGCTCTGATGGGATCTTGAGTCCGCTTAATTCAGACTTGCCTGCCGAAGGT TTAGACTTGAGTGATGTTTCCCCGGCCGACGTATCTGATGGCATTTCAGAGAAAGAGTCTGATTGA
AA sequence Show only first row Show all	>Potri.008G101100.2 pacid=42807520 polypeptide=Potri.008G101100.2.p locus=Potri.008G101100 ID=Potri.008G101100.2.v4.1 annot-version=v4.1 MASLAQQFAGLRCPPISISRLTERAATFSKPKRAANFVVTAKAVAISNAQTKEREKLKQLFEEAYERCRTAPMEGVSFTVEDFHSALDAYDFNSEIGTRV KGTVFMTDNNGALVDITAKSSAYLPVQEASIHRIKRLEEAGIVPGMREEFVIIGENEADDSLILSLRSIHYELAWERCRQLQAEDVIVKGKVVGGNKGGL VAVVEGLRGFVPFSQISSKSTPEELLDKEFPLKFVDVDEEQSRLILSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSD IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILSPLNSDLPAEG LDLSDVSPADVSDGISEKESD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	0	1
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.004G045700 [exp]	1.00	0.9901
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.006G265400 [exp]	1.73	0.9886
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	2.00	0.9887
AT1G22850			SNARE associated Golgi protein...		Potri.019G071900 [exp]	2.00	0.9884
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	2.23	0.9884	Pt-HHOA.1
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	4.89	0.9881
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	6.48	0.9839
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	6.70	0.9834
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	6.70	0.9859
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Potri.005G172600 [exp]	6.92	0.9843

Compare expression of checked genes

Potri.008G101100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.