Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49930 1464 / 0 EMB1441 embryo defective 1441, zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037821 [exp] 1411 / 0 AT5G49930 1427 / 0.0 embryo defective 1441, zinc knuckle (CCHC-type) family protein (.1) Lus10017099 [exp] 1103 / 0 AT5G49930 1077 / 0.0 embryo defective 1441, zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0684 [poplar] [flax] NFACT_RNA-bind PF05670 [poplar] [flax] NFACT-R_1 NFACT protein RNA binding domain CL0303 [poplar] [flax] H2TH PF05833 [poplar] [flax] FbpA Fibronectin-binding protein A N-terminus (FbpA) CL0303 [poplar] [flax] PF11923 [poplar] [flax] NFACT-C NFACT protein C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G101200.2 pacid=42808221 polypeptide=Potri.008G101200.2.p locus=Potri.008G101200 ID=Potri.008G101200.2.v4.1 annot-version=v4.1 ATGGTGAAGGTACGGATGAATACGGCCGATGTGGCCGCTGAAGTGAAATGTCTGCGTCGTCTAATCGGCATGCGTTGCTCCAATGTCTACGATCTCTCCC CCAAGACGTATGTGTTCAAGCTAATGAATAGCAGTGGAGTTACAGAATCAGGAGAAAGCGAGAAAGTTTTATTATTAATGGAAAGCGGTGTTCGCTTGCA CACCACTGCTTATGTCAGAGATAAAAGTAATACTCCCTCCGGTTTTACTTTAAAATTGCGAAAACATATTCGTGCTAGGAGACTGGAAGATGTGCGGCAG CTCGGATATGATAGGATCGTTCTGTTTCAATTCGGACTTGGAGCTAATGCACATTATGTTATCTTGGAGTTGTATTCGCAAGGCAATATTATACTTGCTG ATTCTGAGTTTATGGTTTTGACTCTTCTTCGGTCACACAGGGATGATGATAAAGGGGTTGCTATTATGTCGAGGCATCGATATCCTACTGAAATTTGCCG AGTTTTTGAGCGATCGACAGCTGAGAAGTTGCAGAAGGCTCTAACATCTCTTAAGGAACTGGAAAATAGTAACCCTGTGAAAGTTGATGCTGATGGTGGT GACAGTAATGTGTCTGATAAACCTATGAAAGTTGATGCTGATGGTGGTGACAGTAATGTGTCTGATAAACCTATGAAAGAAAAACAGGGGAAAAATAAGG GTGGGAAATCTTCAGTGCCTAGTAAAAATACCAATGAAGGGAATCGTGTCAAACAAGCTACGTTGAAAACTGTTCTTGGGGAGGTGTTGGGCTATGGTCC TGCGCTTTCTGAGCACATTATATTGGATGCTGGTTTGGTACCAAATACAAAGTTTTCTAAAGATAACAAATTAGATGATGAGACCATTCAGGTTTTGGTA AAAGCTGTTGCAAAGTTTGAAAACTGGCTCCAGGACATTATTTCGGGAGATAAAGTCCCTGAAGGCTACATTTTGATGCAGAACAAAAATTTGGGCAAGG ATTGCCCTCCATCTGACTCCGGAAGTTCTGTCCAGATCTACGATGAGTTCTGCCCTTTGTTGCTGAACCAGTTCAGAATGAGGGAACATGTGAAGTTTGA TGCATTTGATGCAGCTTTGGATGAGTTTTACAGCAAGATTGAAAGTCAAAAGTCAGAGCATCAACAGAAGACAAAGGAGGGCTCTGCCATTCAGAAACTA AATAAAATACGCCTGGACCAGGAAAATCGTGTGGAAATGCTGAGGAAAGAAGTTGACCACAGTGTCAAAATGGCAGAATTAATAGAATACAACTTAGAAG ATGTGAATTCTGCTATCTTAGCTGTTCGTGTGGCTCTTGCAAAGGGAATGGGTTGGGAGGATCTTGCTCGGATGGTGAAGGATGAGAAGAAGGCAGGAAA CCCTGTCGCTGGCTTAATTGACAAGCTCCATTTTGAAAAGAACTGCATGACATTGCTATTAAGCAATAATCTTGATGAAATGGATGATGATGAAAAGACA TTTCCGGTGGATAAGGTAGAAGTCGATTTAGCACTTTCTGCACATGCCAATGCACGGAGGTGGTATGAACTGAAGAAAAAGCAGGAGAGCAAGCAGGAAA AAACTGTTACTGCACATGAAAAAGCTTTTAAAGCTGCTGAGAAAAAAACCCGTCTCCAGCTTTCCCAGGAAAAATCTGTTGCCACTATATCACACATGCG TAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATCAGCAGTGAGAACTATTTGGTTATTAGTGGACGTGATGCTCAGCAAAATGAGATGATAGTCAAG CGTTATGTGTCAAAAGGAGATTTGTATGTCCATGCAGATCTGCATGGAGCTTCCAGTACTGTGATAAAAAATCACAGGCCTGAACAACCTGTACCTCCTC TCACTTTAAATCAAGCTGGATGTTTTACAGTTTGCCACAGTCAGGCATGGGATTCGAAGATTGTCACTAGTGCTTGGTGGGTGTACCCTCACCAGGTCAG TAAAACTGCTCCTACTGGAGAATATCTTACTGTTGGGAGTTTCATGATCCGTGGGAAAAAGAATTTTCTCCCACCACATCCTCTTATAATGGGCTTTGGG TTGTTGTTTCGCTTAGACGAGAGCTCTTTGGGCTCCCATTTAAATGAAAGGAGGGTTAGAGGTGAGGAGGATGGGGTGAATGATGTTGAAGAAAGTCAGC CTCTCAAGGAAATTTCTGATTCTGAGTCAGAGGAGGAGGAAGTTGCTGGAAAAGAACTTGTGTTAGAATCAGAAAGCCATTCTAATGACTTGACTGTCTC CAATACCATTTTACATGAATCTTCTGTCCAAGAGACTTCCCTTAATGGTGTCAATATTGAAAATTTATCTGATGTTGTCGGAAACGATGTTGCTCCAGTT ACCCCACAACTCGAGGATCTCATTGATAGAGCTCTTGGGCTTGGACCTACTGCTGTGTCCAGTAAAAATTATGGAGTTGAACCATTACAAGTTGACATGA CGGAAGAACATCATGAAGAAGCAAGAGATAAACCTTATATTTCAAAAGCTGAGAGAAGGAAGCTCAAGAAAGGTCAGAGAAGTAGTGCTACAGATGCAGA AGTTGAGCGGGAAAAGGAAGAATTGAAAGACAATGTTGTTTCTGTTGACCAACCTGAAAAGCATGTTCAAAACAATAAGCAAGGCGGTGGGAAAATCATT CGTGGTCAGAGGAGTAAGCTTAAGAAGATGAAGGAGAAGTATTCCAATCAGGATGAGGAAGAGAGGAGTATTCGGATGGCTTTACTGGCTTCTGCTGGAA ATACACGCAAGAATGATGGAGAGATTCAAAATGGAAATGAAGCTACTGACAAAGGGAAGATATCTATTACCGGTACTGAAGATGCTCTGAAAGTATGTTA TAAATGTAAAAAGGCAGGCCACCTATCTCGGGATTGCCCAGAACATCCTGATGACAGTTTGAATAGTCGTGCAGATGGTGCTGTAGATAAATCTCATGTG AGTTTGGTTGATTCCACCTCTGAGGTGGACAGGGTGGCTATGGAGGAGGAAGATATTCATGAGATAGGCGAACAAGAGAAAGAGAGGTTGAATGACTTGG ATTACTTGACTGGGAACCCACTGCCTATTGATATTCTCTCATATGCAGTGCCTGTCTGTGGTCCATACAGTGCAGTGCAGTCATACAAGTACCGTGTGAA GGTTATTCCTGGCACTGTAAAGAAAGGAAAAGCTGCAAGAACTGCCATGAACTTATTTAGCCACATGCCAGATGCAACTAGTAGAGAGAAAGAATTGATG AAAGCGTGTACAGATCCTGAGCTAGTAGCTGCAATTGTTGGCAATGTGAAGATCACTGCTGCAGGACTTGCACAATTGAAGCAGAAGCAAAAGAAAGTTA AGAAGAACAACAAAGGTGAAAGTTAG
AA sequence Show only first row Show all	>Potri.008G101200.2 pacid=42808221 polypeptide=Potri.008G101200.2.p locus=Potri.008G101200 ID=Potri.008G101200.2.v4.1 annot-version=v4.1 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYVFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYVRDKSNTPSGFTLKLRKHIRARRLEDVRQ LGYDRIVLFQFGLGANAHYVILELYSQGNIILADSEFMVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERSTAEKLQKALTSLKELENSNPVKVDADGG DSNVSDKPMKVDADGGDSNVSDKPMKEKQGKNKGGKSSVPSKNTNEGNRVKQATLKTVLGEVLGYGPALSEHIILDAGLVPNTKFSKDNKLDDETIQVLV KAVAKFENWLQDIISGDKVPEGYILMQNKNLGKDCPPSDSGSSVQIYDEFCPLLLNQFRMREHVKFDAFDAALDEFYSKIESQKSEHQQKTKEGSAIQKL NKIRLDQENRVEMLRKEVDHSVKMAELIEYNLEDVNSAILAVRVALAKGMGWEDLARMVKDEKKAGNPVAGLIDKLHFEKNCMTLLLSNNLDEMDDDEKT FPVDKVEVDLALSAHANARRWYELKKKQESKQEKTVTAHEKAFKAAEKKTRLQLSQEKSVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVK RYVSKGDLYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFG LLFRLDESSLGSHLNERRVRGEEDGVNDVEESQPLKEISDSESEEEEVAGKELVLESESHSNDLTVSNTILHESSVQETSLNGVNIENLSDVVGNDVAPV TPQLEDLIDRALGLGPTAVSSKNYGVEPLQVDMTEEHHEEARDKPYISKAERRKLKKGQRSSATDAEVEREKEELKDNVVSVDQPEKHVQNNKQGGGKII RGQRSKLKKMKEKYSNQDEEERSIRMALLASAGNTRKNDGEIQNGNEATDKGKISITGTEDALKVCYKCKKAGHLSRDCPEHPDDSLNSRADGAVDKSHV SLVDSTSEVDRVAMEEEDIHEIGEQEKERLNDLDYLTGNPLPIDILSYAVPVCGPYSAVQSYKYRVKVIPGTVKKGKAARTAMNLFSHMPDATSREKELM KACTDPELVAAIVGNVKITAAGLAQLKQKQKKVKKNNKGES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Potri.008G101200 [exp]	0	1
AT4G15840			BTB/POZ domain-containing prot...		Potri.010G014000 [exp]	4.58	0.7919
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	7.21	0.8262	HAF902
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	13.49	0.7993
AT5G43100			Eukaryotic aspartyl protease f...		Potri.014G020200 [exp]	21.63	0.7080
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	25.00	0.7890
AT5G20610			unknown protein		Potri.006G145500 [exp]	36.98	0.7736
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	39.49	0.7824
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	41.42	0.7485
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	41.76	0.7778
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.004G162500 [exp]	43.41	0.7127

Compare expression of checked genes

Potri.008G101200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.