Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17205 1432 / 0 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 295 / 8e-84 UPL7 ubiquitin-protein ligase 7 (.1.2) AT1G55860 196 / 2e-50 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 191 / 6e-49 UPL2 ubiquitin-protein ligase 2 (.1) AT5G02880 122 / 5e-28 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 96 / 1e-19 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT4G12570 75 / 2e-13 UPL5 ubiquitin protein ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G150000 [exp] 1867 / 0 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 289 / 1e-81 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.001G368600 [exp] 194 / 4e-50 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 192 / 2e-49 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.002G110500 [exp] 189 / 3e-48 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G085200 [exp] 115 / 7e-26 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 105 / 1e-22 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.009G134300 [exp] 97 / 4e-20 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.004G174700 [exp] 94 / 4e-19 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017098 [exp] 1196 / 0 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10037820 [exp] 1136 / 0 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10035589 [exp] 293 / 4e-83 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 253 / 3e-69 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10032830 [exp] 191 / 6e-49 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 191 / 7e-49 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 185 / 3e-47 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10019908 [exp] 117 / 3e-26 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027841 [exp] 100 / 4e-21 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10005068 [exp] 87 / 6e-17 AT4G38600 2305 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.008G101300.1 pacid=42807294 polypeptide=Potri.008G101300.1.p locus=Potri.008G101300 ID=Potri.008G101300.1.v4.1 annot-version=v4.1 ATGTTTTTCAACGGCGATTCATCCACGAGGAAGCGAGTCGATTTAGGAGGCCGGAGTTCGAAGGAGAGAGATAGGAAGAAGCTTCTTGAACAAACTAGAT TGGAACGTAATAGTCGGTTGTGGGTGAAGCAACAGAATGCCGCTGCTGTCAAAATTCAAAAATGGTTCAGAGGGAGAAAGGCAGTGGAGGCTGAACATTC TAGGGTGCGAGGGAAGTTCCATGGAACCTATGGCAAGTGTTGCCAAAATGTAGACAGGCATTGTTTTGGTCCGGATTCAGAGTTCTTCCGGCAGCTATTA TTTTTCTTCAATGCAAAAGATAGTGATGATTTCACAATCCTCGTGGAGACTTGCCGATTGCTTCTGCAAAATGTTCAAGATAGCGGGGATATCGTGAGCC TATTTGCTGGTGGGGATTATTCAACCAAGCATGCTTTGGTGGAGTATAGGGTCAAAAAACTATCATTTGCCTGTATTTGGGCTATCTATCAAAATAGAAA ACAATTGAAGGATCAATTAGTGATGATGCCCAGGGATTCAAGCATAACAGCAACTCTCTTGCTGGAAGCTGTAGCTTTGCTGATCGATCCCAAACTTCCA TGGGCTTGTAAGGTCGTTGGTTATCTCTTGCAAAGGAATGTGTTTGCTCTATTTCGAGAGATTGTTCTAACAGGAAAGGAGAATATGAGGAGTGACAGTT CCATCAGAAATGCATCTCCATTGGAGCGTATTCTTGCCCTTGTGATATCTCATGTTGGTCAGAAGCCATGTATTTGCCCCACCATTGATCTGCAATGGAG TTTCTCATCTCAGATGCTGACAATTCCTTTACTATGGCGACTTTTTCCTAATTTAAAAGAGGTTTTTGCAACTCAGGGGCTGAGCCGACATTACATTAAT CAGATGGCACGTTGCATGCGGAATAATACTTATGTACTGCCCAATGATCTTTCTGTGGAATATCCTGGCCACGCTTGTCTTCTAGGAAATATGTTAGAAA CCGCAGGAGCTGCTTTGTCTCATGCTGACTGTTCATTTGAGATGGCTATAGATATTGCTGCCGTGACAACATTCTTGTTGGAGGCACTTCCTCCTATAAA ATCATCAAGTCCAGAAATTAGACCAAGCTCCACTCTGGATGAGGATGATATGGCTTTGCCTGATGAAATGGAAATTGTCTTAAACAAGGATTTGGAACAC AAGATAGTCCATGCTATGCATTCACGCTTTCTCTTGCAATTGACGAGTGTTTTATTTGGGGAGATTACAATGGTCAGTGGTTCAAACCATGGACTGGACG ATAAAGAGGTTGCAGCTATTGGTGCTGCTTGTGCTTTTTTGCATGTTGCTTTCAACACTTTGCCAGTTGAGCGAATGATGACTGTACTAGCTTTTAGAAC TGAACTTGTTCAAGTGCTTTGGAATTTTATGAAGCAGTGTCATGAGAATAAAAAGTGGCCATCCTTGCCTGATCAGTTATCATATCTACCAGGAAATGCA CCTGGCTGGCTATTACCTCTGGCTGTTTTTTGTCCTGTATATAAGTACATGCTTATGTTAGTTGACAATGAGGAGTTCTATGAACAGGAGAAGCCTTTAT CATTGAAGGATGTCCGGTGCCTAATTGTTATTTTGAGACAGGCCCTATGGCAGCTCCTATGGGTGAATCCTAAAGTGAACAGTAATTCAGTTAAACTCAT CAAGAACACCTCTGTTTATAGTGGGAACCCTATTGAATCTATTAAACAGAGAGTTAGTCTTGTAGCCTCTGAGCTCCTCTCTCAGTTGCAAGATTGGAAC AATAGACGACAATTTGCACCACCCAATGATTTCCATGCTGATGGTGTTGATGACTCATTTATTTCTCAGGCTGTAATAGATGGAACCAAAGCAAATGACA TTATGAAACAGGCTCCTTTCTTGGTACCTTTTACAAGCAGAGTTAAAATATTCAATTCACAATTATTGGCAGTTAGGCAAAGACAAGGGTCCCATGGTGT TTTTACAAGAAACAGATACAGAATACGGAGAGATCATATTTTGGAAGATGCTTATAATCAGATGAGTGCATTGTCCGAGGAGGATCTTCGAGGATTGATT CGTGTATCATTTATCAATGAGTTTGGAGTTGAGGAAGCTGGCATTGATGGTGGTGGCATTTTTAAAGATTTCATGGAAAACATTACTCGAGCTGCCTTCG ATGTGCAGTATGGGTTGTTTAAGGAAACATCTGATCACCTACTCTACCCCAATCCTGGATCAGGAATGCTACACGAACAACATCTTCAATTTTTTCATTT TCTTGGAACTCTTCTTGCAAAGGCTATGTTTGAAGGTATTCTTGTTGATATACCTTTTGCAACATTCTTCCTAAGCAAATTAAAGAAGAAGTACAACTAT TTGAATGACTTGCCTTCATTGGATTCAGAATTATATCGCCACCTTATTTTCCTAAAGCGTTATCAAGGTGATATTTCTGACTTGGAGCTCTACTTTGTCA TCGTAAATAATGAATATGGCGAGCTAACAGAAGAGGAGCTGCTTCCTGGAGGAAGAAACCAGCGTGTCACTAATGACAATGTCATTCCTTTTACCCATCT TGTATCCAATTATCGTCTAAATTATCAGATACGTCTACAAAGTTCTCATTTCATGAGGGGCTTTCAGCAGCTTATAAAGAAAGAATGGATTGATATGTTT GACGAGCATGAACTTCAGCTTCTGATATCAGGTTCGCTTGATGGCTTGGATATTGATGACTTGCGCATTCATAGCAATTATGGTGGTGGTTATCATAGTG AGCATTATGTTATTGAGATGTTCTGGGAAGTTCTGAAAGGTTTTTCCATGGAAAATCAAAAGAAAATTTTGAAGTTTGTGACTGGTTGTTCACGGGGACC TTTGCTTGGATTTAAATATCTTGAGCCCTTATTTTGTATACAAAGGGCTGGGGGCACTGCCTCTGAGGAAGCTCTTGATCGGCTGCCGACATCAGCTACT TGCATGAATCTTCTAAAGCTTCCACCTTATAGAAGCAAAGAGCAGCTAGCAACGAAATTGCTATATGCTATAAATGCTGATGCGGGTTTTGATTTGAGCT GA
AA sequence Show only first row Show all	>Potri.008G101300.1 pacid=42807294 polypeptide=Potri.008G101300.1.p locus=Potri.008G101300 ID=Potri.008G101300.1.v4.1 annot-version=v4.1 MFFNGDSSTRKRVDLGGRSSKERDRKKLLEQTRLERNSRLWVKQQNAAAVKIQKWFRGRKAVEAEHSRVRGKFHGTYGKCCQNVDRHCFGPDSEFFRQLL FFFNAKDSDDFTILVETCRLLLQNVQDSGDIVSLFAGGDYSTKHALVEYRVKKLSFACIWAIYQNRKQLKDQLVMMPRDSSITATLLLEAVALLIDPKLP WACKVVGYLLQRNVFALFREIVLTGKENMRSDSSIRNASPLERILALVISHVGQKPCICPTIDLQWSFSSQMLTIPLLWRLFPNLKEVFATQGLSRHYIN QMARCMRNNTYVLPNDLSVEYPGHACLLGNMLETAGAALSHADCSFEMAIDIAAVTTFLLEALPPIKSSSPEIRPSSTLDEDDMALPDEMEIVLNKDLEH KIVHAMHSRFLLQLTSVLFGEITMVSGSNHGLDDKEVAAIGAACAFLHVAFNTLPVERMMTVLAFRTELVQVLWNFMKQCHENKKWPSLPDQLSYLPGNA PGWLLPLAVFCPVYKYMLMLVDNEEFYEQEKPLSLKDVRCLIVILRQALWQLLWVNPKVNSNSVKLIKNTSVYSGNPIESIKQRVSLVASELLSQLQDWN NRRQFAPPNDFHADGVDDSFISQAVIDGTKANDIMKQAPFLVPFTSRVKIFNSQLLAVRQRQGSHGVFTRNRYRIRRDHILEDAYNQMSALSEEDLRGLI RVSFINEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMLHEQHLQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKKKYNY LNDLPSLDSELYRHLIFLKRYQGDISDLELYFVIVNNEYGELTEEELLPGGRNQRVTNDNVIPFTHLVSNYRLNYQIRLQSSHFMRGFQQLIKKEWIDMF DEHELQLLISGSLDGLDIDDLRIHSNYGGGYHSEHYVIEMFWEVLKGFSMENQKKILKFVTGCSRGPLLGFKYLEPLFCIQRAGGTASEEALDRLPTSAT CMNLLKLPPYRSKEQLATKLLYAINADAGFDLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	0	1
AT5G49960			unknown protein		Potri.013G128100 [exp]	1.41	0.8554
AT1G73970			unknown protein		Potri.008G016000 [exp]	3.16	0.8467
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.002G110800 [exp]	4.47	0.8289
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.010G180600 [exp]	4.89	0.8039
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	5.65	0.8339
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	8.36	0.7984
AT2G19390			unknown protein		Potri.006G146600 [exp]	11.35	0.8364
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.006G134000 [exp]	13.26	0.7966
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	15.29	0.8027	SEU.1
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034700 [exp]	15.55	0.8051	ATMRP12.4

Compare expression of checked genes

Potri.008G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.