Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06500 912 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT1G56560 865 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 855 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT5G22510 760 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT4G09510 588 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT4G34860 587 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G22650 585 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G72000 575 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT1G35580 573 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006600 [exp] 946 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.005G010800 [exp] 938 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 761 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 749 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 746 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G167500 [exp] 596 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 592 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 589 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 586 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037817 [exp] 1019 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10017095 [exp] 1002 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10010900 [exp] 897 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10031431 [exp] 897 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10043375 [exp] 770 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 766 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10033144 [exp] 598 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 595 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10014824 [exp] 586 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 585 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF12899 [poplar] [flax] Glyco_hydro_100 Alkaline and neutral invertase
Representative CDS sequence Show only first row Show all	>Potri.008G101500.2 pacid=42806928 polypeptide=Potri.008G101500.2.p locus=Potri.008G101500 ID=Potri.008G101500.2.v4.1 annot-version=v4.1 ATGAACAGTAGTAGTTGTATTGGTATCTCAACAATGAAACCCTGTTGCAGAATCATAATTAGTTACCGAAGTTTTTCACATTTTGGGGTTTCTCTCTCAA GATCTAATAATAATTCAGTCATTCATACCAATTTGTCGAAATCACACCCGAAATCGGTATATAATCATGAATTCCACTGCTGTAATAACCGTAGTTGGTC ACAAGATACGGGTCATAAATGTATAGTTAATCTGGATCGCAGAGGTTTTAATGTCTGCGATTGGAATTGGGGTCATGCTAGGGGTTTTAGTTCAGGTTTT CTTGTCGATAAGGGTAGTAGTTCAAGGGGTGTTTTAGTAATTCCCAAAGTAGCGTCAGACATTAGGAATCATTCGACTTCGGTAGAGGGTCATGTTAATA CGAAAGGATTTGAGAGTATTTACATTCAAGGAGGGTTGAATGTGAAGCCTTTAGTGATAGAAAAGATTGAAACAGAAAGTGATGTAGCTAAAGAAGGAAA AGAGGAAACATCTAGTAATAGGGTGGAGATTAATGGATCCGAAGTAAATACAAACTTCTTCAAGGGTTTGAATGAGAGCACAACTCCTAAGGTTGTTGAG AGAGAGGTGTCTAAGATCGAGAAGGAAGCGTGGCAGTTGCTTCGAGGCACCATTGTGAATTACTGTGGGAATCCAGTAGGGACTGTCGCTGCTAATGATC CTGCCGACAGGCAACCGTTGAATTATGACCAAGTCTTCATTCGTGATTTTGTTCCATCCGCACTTGCTTTTTTGCTTAATGGAGAAATGGAGATTGTGAA GAATTTTCTTCTTCACACTTTGCAGTTGCAGAGCTGGGAGAAAACAGTGGACTGTTACAGTCCTGGGCAAGGGTTAATGCCAGCAAGTTTTAAAGTTAAA ACAGTGCCTCTTGATGGTAGTGATGGAGGTTTTGAGGAGGTTTTGGATCCTGATTTTGGTGAATCGGCCATTGGGCGTGTTGCGCCTGTTGATTCTGGGC TGTGGTGGATAATTTTGTTGAGAGCTTATGGGAAGATAACAGGCGACTATGCATTGCAAGAGAGGGTTGATGTCCAGACAGGAATCAGACTCGGACTAAA TTTGTGTTTATCAGATGGGTTTGATATGTTTCCTACGCTGTTAGTCACTGATGGTTCCTGCATGATTGATAGACGGATGGGTATCCATGGACACCCTCTT GAAATCCAAGCCTTGTTCTATTCTGCTTTGCGATGTGCTCGTGAGATGCTCATAGTCAATGATGAAACCAAGAATCTGGTGGCTGCAATAAATAATCGAC TCAGTGCACTCTCATTCCATATCAGAGAGTATTATTGGGTGGACATGAGGAAGATCAATGAGATCTACCGTTACAACACTGAAGAATACTCTACAGATGC AGTCAACAAGTTCAACATATACCCCGATCAAATTCCTTCATGGCTAGTGGATTGGATTCCTGAGGAAGGTGGTTACCTCATTGGCAATCTACAGCCGGCT CACATGGATTTTAGGTTTTTTACTCTTGGGAACCTTTGGGCCATCGTCTCTTCTCTGGGAACCTCAAAACAAAATGAGGGTATCCTAAATTTGATCGAGG CCAGGTGGGATGATCTCATGGGCCATATGCCTCTTAAGATTTGTTACCCTGCTTTGGAATATGAAGAATGGCGCATAATTACTGGCAGTGATCCAAAGAA CACCCCATGGTCATATCACAATGGTGGATCTTGGCCAACACTGCTGTGGCAGTTCACATTAGCTTGTATCAAGATGGGGAAACCAGAATTAGCACAAAAG GCAATTGCTTTGGCAGAGACGAGATTATCAATGGATCAATGGCCTGAATACTATGACACTCGCAGTGGAAGGTTTATAGGCAAACAGTCCAGGCTTTTTC AGACATGGACAATCTCTGGTTTCCTAACATCAAAGATGCTTTTAGAGAATCCAGATAAAGCATCCTTGTTGTTCTTGGAAGAGGATTATGAGCTCCTGGA GATATGTGTTTGTGCACTAAGCAAAACTGGCCGGAAGAAGTGCTCACGCTTTGCTGCAAGATCTCAAATTCTTGTCTGA
AA sequence Show only first row Show all	>Potri.008G101500.2 pacid=42806928 polypeptide=Potri.008G101500.2.p locus=Potri.008G101500 ID=Potri.008G101500.2.v4.1 annot-version=v4.1 MNSSSCIGISTMKPCCRIIISYRSFSHFGVSLSRSNNNSVIHTNLSKSHPKSVYNHEFHCCNNRSWSQDTGHKCIVNLDRRGFNVCDWNWGHARGFSSGF LVDKGSSSRGVLVIPKVASDIRNHSTSVEGHVNTKGFESIYIQGGLNVKPLVIEKIETESDVAKEGKEETSSNRVEINGSEVNTNFFKGLNESTTPKVVE REVSKIEKEAWQLLRGTIVNYCGNPVGTVAANDPADRQPLNYDQVFIRDFVPSALAFLLNGEMEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVK TVPLDGSDGGFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLGLNLCLSDGFDMFPTLLVTDGSCMIDRRMGIHGHPL EIQALFYSALRCAREMLIVNDETKNLVAAINNRLSALSFHIREYYWVDMRKINEIYRYNTEEYSTDAVNKFNIYPDQIPSWLVDWIPEEGGYLIGNLQPA HMDFRFFTLGNLWAIVSSLGTSKQNEGILNLIEARWDDLMGHMPLKICYPALEYEEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGKPELAQK AIALAETRLSMDQWPEYYDTRSGRFIGKQSRLFQTWTISGFLTSKMLLENPDKASLLFLEEDYELLEICVCALSKTGRKKCSRFAARSQILV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	0	1
AT1G08440			Aluminium activated malate tra...		Potri.009G017900 [exp]	1.41	0.7973
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G181500 [exp]	1.73	0.7871
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	3.74	0.7953
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	6.63	0.7842
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	7.07	0.7462	DREB65
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	7.07	0.7676
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	7.74	0.7573
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	9.00	0.7512
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.004G181700 [exp]	9.48	0.7102	PtrEXLA1,EXLA1.2
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	12.24	0.7175

Compare expression of checked genes

Potri.008G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.