Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA2.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47990 349 / 2e-120 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G02400 343 / 1e-117 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT2G34555 291 / 4e-97 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G30040 291 / 4e-97 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT1G78440 283 / 3e-94 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT5G51810 151 / 1e-42 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT1G15550 148 / 2e-41 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT2G38240 147 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 145 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G07200 145 / 2e-40 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149700 [exp] 589 / 0 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.002G191900 [exp] 437 / 9e-155 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.014G117300 [exp] 425 / 4e-150 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.001G378400 [exp] 346 / 7e-119 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 339 / 1e-115 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 318 / 5e-108 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.015G002800 [exp] 166 / 2e-48 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 160 / 4e-46 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146000 [exp] 154 / 9e-44 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009998 [exp] 383 / 3e-133 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10025016 [exp] 376 / 1e-130 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 372 / 3e-129 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 360 / 3e-124 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 353 / 1e-122 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 258 / 2e-84 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 188 / 7e-59 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10011476 [exp] 159 / 2e-45 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10027399 [exp] 158 / 5e-45 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 158 / 1e-44 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G101600.1 pacid=42807436 polypeptide=Potri.008G101600.1.p locus=Potri.008G101600 ID=Potri.008G101600.1.v4.1 annot-version=v4.1 ATGGTAGTGGCATCTCCAACTAAACTTCACAGTGAAGAACACCTGGCCATTGAGCTTCCTACAGTAGACCTCTCAGGAGATAGATCAATGGTTTCCAATC TCATTGTCAAAGCCTGTGAGGAATATGGTTTCTTCAAGGTGAAAAACCATGGTGTTCCTCATGACATCATTGCCCAAATGGAGAAAGAAAGTTTCAACTT CTTTGCCAAACCATTCGATGAAAAGCAAAAGGTTGAGCCGGCCAAACCCTTTGGTTATGGCTGCAAAAATATTGGCTTCAATGGTGATATGGGAGAGGTG GAATATCTACTTCTTAATATCAACCCTCTCTCCATAGCTGAAAGGTCCAAAACCATCTCCAATGACCCTGCAAAATTCAGCTCCGCTGTGAGTGCTTACA TAGAAGCAGTTAGGGAGCTGGCATGTGAGTTATTAGATCTGATGGCGGAGGGGCTGCGGGTCCCGGATAGATCAGTGTTTAGTAGGCTAATCAGAGATGT TGACAGTGACTCCCTCATCAGGTTAAACCACTACCCCCCTATGCCTCTGCTCTGCAAGGATGAGGACTCGTCACCTTGTAACCAAAACAAGGTAGGGTTC GGAGAGCATTCTGACCCTCAGATCTTGACCATCTTGAGATCCAACGATGTGGGTGGCCTTCAGATTTCCTTAAATGATGGTGCGTGGGTCCCAGTAACAC CTGATCCCGCTACCTTCTGGGTTAATGTGGGTGACTTGTTACAGGCAATGACAAATGGGAGATTTGTAAGTGTGAGGCACAAAGCCCTAACCAACTCTTC CAAGTCTAGAATGTCAATGGCCTATTTTGCTGGCCCTCCACCCAATGCGAGGATCACTGTTCCACCAGAAATGATTACCCCCACCAAGCCGGCATTATAC AAGCCCTTTACCTGGGCTGAATTCAAGAAAGCTGCTTATGCTATGCGACTTGGAGATAGACGCCTTGGTCTATTCAGGATGGAAGGAGACGAGCAAGTTG CTTGA
AA sequence Show only first row Show all	>Potri.008G101600.1 pacid=42807436 polypeptide=Potri.008G101600.1.p locus=Potri.008G101600 ID=Potri.008G101600.1.v4.1 annot-version=v4.1 MVVASPTKLHSEEHLAIELPTVDLSGDRSMVSNLIVKACEEYGFFKVKNHGVPHDIIAQMEKESFNFFAKPFDEKQKVEPAKPFGYGCKNIGFNGDMGEV EYLLLNINPLSIAERSKTISNDPAKFSSAVSAYIEAVRELACELLDLMAEGLRVPDRSVFSRLIRDVDSDSLIRLNHYPPMPLLCKDEDSSPCNQNKVGF GEHSDPQILTILRSNDVGGLQISLNDGAWVPVTPDPATFWVNVGDLLQAMTNGRFVSVRHKALTNSSKSRMSMAYFAGPPPNARITVPPEMITPTKPALY KPFTWAEFKKAAYAMRLGDRRLGLFRMEGDEQVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.008G101600 [exp]	0	1	GA2.4
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.019G004100 [exp]	9.69	0.8767
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	9.79	0.8077
AT3G58060			Cation efflux family protein (...		Potri.001G010000 [exp]	10.00	0.8385
					Potri.010G223733 [exp]	13.41	0.8504
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	15.49	0.8363
AT2G22790			unknown protein		Potri.007G008900 [exp]	16.43	0.8721
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020600 [exp]	20.85	0.8251
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.009G007100 [exp]	23.34	0.8619
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025900 [exp]	26.15	0.8648
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.015G148200 [exp]	27.27	0.8704

Compare expression of checked genes

Potri.008G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.