Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49580 352 / 8e-116 Chaperone DnaJ-domain superfamily protein (.1) AT1G79030 192 / 5e-56 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 187 / 4e-54 Chaperone DnaJ-domain superfamily protein (.1) AT3G06510 63 / 1e-10 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) AT3G62600 53 / 2e-07 ATERDJ3B DNAJ heat shock family protein (.1) AT3G17830 51 / 8e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G39960 51 / 1e-06 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 50 / 2e-06 DNAJ heat shock family protein (.1) AT1G77020 49 / 2e-06 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G28480 49 / 3e-06 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148900 [exp] 483 / 3e-166 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G438300 [exp] 191 / 2e-55 AT1G79030 783 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G142000 [exp] 189 / 9e-55 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G149500 [exp] 84 / 3e-17 AT3G06510 832 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Potri.002G198000 [exp] 54 / 8e-08 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 53 / 2e-07 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 52 / 4e-07 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.019G083700 [exp] 50 / 1e-06 AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 50 / 1e-06 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017085 [exp] 390 / 8e-130 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10037801 [exp] 300 / 2e-93 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10032666 [exp] 196 / 3e-57 AT1G79030 772 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10043089 [exp] 173 / 1e-50 AT1G79030 398 / 6e-136 Chaperone DnaJ-domain superfamily protein (.1) Lus10011147 [exp] 82 / 2e-16 AT3G06510 826 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10043048 [exp] 81 / 4e-16 AT3G06510 767 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10037502 [exp] 60 / 1e-09 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10014584 [exp] 56 / 2e-08 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 56 / 3e-08 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10017472 [exp] 55 / 4e-08 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14901 [poplar] [flax] Jiv90 Cleavage inducing molecular chaperone
Representative CDS sequence Show only first row Show all	>Potri.008G101800.2 pacid=42806613 polypeptide=Potri.008G101787.1.p locus=Potri.008G101800 ID=Potri.008G101800.2.v4.1 annot-version=v4.1 ATGGGAATTGATTTGACAAGAATCATGCCAGAGGAGCCTGTCAATGGGCTCGAAGAGAATGTTAATTTTGCAGCATTGGAGCGATATAAGTGGATCATTG CCAGGGTTCGCTCTTATGGAATGAAGCTACGAAGCCATCATCCAATAGCAATCTATTTGCCATGGTGTTCACCATTCTATTCTGCCTTTGGCCTGGGATT ATCAGCAGATTGTAGCCCGGGAGTACCTTCAACCAGTGGGGCTGATTCCGAGTTGACTTCTGAAGAGGAAATTACTCGGTTATTGAACTGTACTGATCAC TACTCCGTGTTGGGTTTGTCCCGAGAGTATAGGAAGATGACAAAGCTGGTTCATCCTGACAAGAATATGGGCAATGAGAAGGCTGCAGAAGCTTTTAAGA AACTTCAAAATGCATACGAGGTGTTACTTGATTCCTTGAAGCGAAAAGCATATGATGATGAATTAAGAAGGGAAGACTTGTTGAACTATTTTCGTAGGTT TCAAAGTACTTCACAAAAGAATGGAGAGCGTGGTTTCTTTGCCTCTTGGTTTGCACATTCAGAGGCTGAAGGTGATGACCCTTTTGGAGAATCAAGGCGA ATAGCTTGCAAAAGGTGTGGCAACTTTCATCTCTGGGTGCATACCAAGAAATCAAAATCCCAAGCAAGATGTTCCAGAATTGACTGCAAAGATTTTCATC AAGCAAAAGATGGAGATGGATGGGTTGAGCAATCTTCACAACCCTTCCTTTTTGGATTATTGCAGAAGGTTGATGCTCCCACTGCATATGTTTGCGCAGA TAGCAAGATATATGATGCCACTGACTGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACAGTCACAAGCCAAGTTTTCATGTAAACACCAGTATAACC TCCAAACACAATACCAGAAAGGGATCCAGTTCAGGACAAAGAAGCGGTCGGATGCCAACACCTAATATGGAGGAAACCATGACAGAAGAAGAATTATTTG AATGGTTACAGAAGGCAGTGCAAGCAGGCGAGTTTGACAACTACAGTTCTGGCACCTCTAATGAGAGCCCATCAGCCAAGGCCGGAAATGGTCCAAAGAG TGGCGGAGGTGGCAGTAGCAGTGGCAACAAAAGGAAGAAAAAGGGGAAGAAGCAATGGTGA
AA sequence Show only first row Show all	>Potri.008G101800.2 pacid=42806613 polypeptide=Potri.008G101787.1.p locus=Potri.008G101800 ID=Potri.008G101800.2.v4.1 annot-version=v4.1 MGIDLTRIMPEEPVNGLEENVNFAALERYKWIIARVRSYGMKLRSHHPIAIYLPWCSPFYSAFGLGLSADCSPGVPSTSGADSELTSEEEITRLLNCTDH YSVLGLSREYRKMTKLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSLKRKAYDDELRREDLLNYFRRFQSTSQKNGERGFFASWFAHSEAEGDDPFGESRR IACKRCGNFHLWVHTKKSKSQARCSRIDCKDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPTAYVCADSKIYDATDWYICQGMRCPANSHKPSFHVNTSIT SKHNTRKGSSSGQRSGRMPTPNMEETMTEEELFEWLQKAVQAGEFDNYSSGTSNESPSAKAGNGPKSGGGGSSSGNKRKKKGKKQW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.008G101800 [exp]	0	1
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	3.00	0.8787
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092100 [exp]	3.87	0.8295
AT5G15270			RNA-binding KH domain-containi...		Potri.008G088600 [exp]	13.85	0.7992
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Potri.008G088100 [exp]	15.23	0.8159
AT1G34380			5'-3' exonuclease family prote...		Potri.013G114400 [exp]	18.49	0.7638
					Potri.003G044301 [exp]	20.49	0.7994
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	22.97	0.7328
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	23.06	0.7775
AT2G39580			unknown protein		Potri.010G208200 [exp]	23.23	0.7900
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	24.73	0.7977

Compare expression of checked genes

Potri.008G101800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.