Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RFC3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17170 265 / 1e-87 RFC3 REGULATOR OF FATTY-ACID COMPOSITION 3, Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017084 [exp] 259 / 8e-85 AT3G17170 268 / 8e-89 REGULATOR OF FATTY-ACID COMPOSITION 3, Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10037801 [exp] 227 / 2e-67 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01250 [poplar] [flax] Ribosomal_S6 Ribosomal protein S6
Representative CDS sequence Show only first row Show all	>Potri.008G101900.1 pacid=42806454 polypeptide=Potri.008G101900.1.p locus=Potri.008G101900 ID=Potri.008G101900.1.v4.1 annot-version=v4.1 ATGGAGACGCTTTTACACAGAACGGCAACTTTTCCAACACCAAAACATAGAGTGTTTTCCCACAGTATCCAAAATAAAAGCTTGTTTATTGCAAGTGGTT GTCACTCTTTTTCTGCAAGGCCATTATTTCTTTCACTGGGACTGAGAAAATCGGTGATAGTTGAAGCCAAAAAGAGCAACAAAAACAATAATAACAAGAA GAATAAACAAGACACTCATAGCTTTGTAGCCAAACCAGATGAAGCCATTGGGCCTTTCCCTGAAGCTATTTTGCTTAAAGAGAAGAAAGCGCAGGAGGAT GGTAGAGTTCTGCCTGAGTTTGCTGATGCTGAAGAAGAGAAGCTCTTTGAATTTTTGAACCTTGAGCTGCAGAGTGAATTGAAAGTGGAGCGATTGCGCC ATTATGAAGTGGTTTATCTAATCCATGAGAAGCATGATGAAGAGGTTGGCAGTTTGAATGAGAAAGTTCAAGATTTTGTGAGGGAGAAGAAAGGCAGGAT ATGGAGATTCAATGATTGGGGCATGCGAAGGTTAGCATACAAAATACAGAAAGCCAAAAATGCTCACTACATCTTGATGAACTTTGAGTTGGAAGCCAGA TGGATCAATGACTTTAAGAACATGTTAGACAAAGATGAAAGAGTCATCCGGCACCTCGTGATAAAGAGGGATGAAGCAATCACAGAGGATTGTCCACCTC CACCTGAGTTCCACACTTTGCAAGGAGGTATGGATAACAACGATGAAGAGGATGGATTAGATTATGACGACAATGACGAAGCATATGATGAGGATTTGGA GGTTGAGGCGGAGGCAGTCTATGGTGATGGTGATGAAGCGGAAGGTAGTGTTAGTGTTATTTCTTTGCACGGGTACAAAGAAGATGACGATGGAAATAAT GAGGTTAGACATAGTAAATTCGCTAGTGCAAGTAACACAAGGAAAAAAGCGGATACCTGA
AA sequence Show only first row Show all	>Potri.008G101900.1 pacid=42806454 polypeptide=Potri.008G101900.1.p locus=Potri.008G101900 ID=Potri.008G101900.1.v4.1 annot-version=v4.1 METLLHRTATFPTPKHRVFSHSIQNKSLFIASGCHSFSARPLFLSLGLRKSVIVEAKKSNKNNNNKKNKQDTHSFVAKPDEAIGPFPEAILLKEKKAQED GRVLPEFADAEEEKLFEFLNLELQSELKVERLRHYEVVYLIHEKHDEEVGSLNEKVQDFVREKKGRIWRFNDWGMRRLAYKIQKAKNAHYILMNFELEAR WINDFKNMLDKDERVIRHLVIKRDEAITEDCPPPPEFHTLQGGMDNNDEEDGLDYDDNDEAYDEDLEVEAEAVYGDGDEAEGSVSVISLHGYKEDDDGNN EVRHSKFASASNTRKKADT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	0	1	Pt-RFC3.1
AT2G41120			unknown protein		Potri.006G025200 [exp]	2.82	0.9767
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Potri.014G160600 [exp]	4.47	0.9768
AT1G45230			Protein of unknown function (D...		Potri.014G028300 [exp]	5.74	0.9708
AT2G44870			unknown protein		Potri.004G030100 [exp]	5.74	0.9766
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.013G108700 [exp]	7.34	0.9727
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	7.48	0.9687
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	7.74	0.9753	Pt-RPL1.1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	8.06	0.9750
AT2G20920			Protein of unknown function (D...		Potri.009G137600 [exp]	8.36	0.9710
AT1G29700			Metallo-hydrolase/oxidoreducta...		Potri.008G117600 [exp]	8.48	0.9707

Compare expression of checked genes

Potri.008G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.