Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06560 573 / 0 PAPS3 poly(A) polymerase 3 (.1) AT2G25850 304 / 6e-95 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT4G32850 302 / 1e-94 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT1G17980 286 / 1e-88 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT5G02670 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235400 [exp] 304 / 1e-94 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.015G043200 [exp] 303 / 1e-94 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.018G057200 [exp] 298 / 2e-92 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006029 [exp] 310 / 3e-97 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 295 / 4e-92 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10021643 [exp] 298 / 2e-91 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 297 / 2e-91 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 292 / 1e-90 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10037589 [exp] 290 / 7e-90 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10009641 [exp] 267 / 6e-81 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10005490 [exp] 258 / 9e-77 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10008574 [exp] 43 / 0.0006 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04928 [poplar] [flax] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Potri.008G102500.3 pacid=42806674 polypeptide=Potri.008G102500.3.p locus=Potri.008G102500 ID=Potri.008G102500.3.v4.1 annot-version=v4.1 ATGGAGGACGAAAGGTCTCTCTCGCTTCTCAAGTTAATGGTTAATGAAGGATTATTCCCATCTCCAGAAGAAGACGAGAAGAGGAAGATTATTGTCGAAA AGCTCAAAACAATTGTGGTAGCGTGGGCTAAGAAGGTGGCGTGGCAGCGGTGTTTACCAAAACAACAAATTGCAGCTACATCTGCTACTATATTGACTTA TGGATCCTATGGGCTTGGATTTCATGATCCAGAGTCTGATATTGATGCTTTATGTGTTGGTCCTTTCTTCGCCACTATAGCTGAGGACTTTTTTATTGTT TTGCACAACATACTTAAGAGCAGGCCTGAAATATCAGAAATCCATTGTGTGAAGGATTCAAAGGTTCCTTTGATGCGGTTTACATTTGATGGGATTTCAG TTGATCTTCCATATGCTCAGCTTAAAGTCTTAAATGTTCCTGAAAATGTGGACATACTCAATCTATCCCTTTTGACTAATATTGATGAGACCAGTTGGAA GAGTTTGTCTGGAGTACGTGCTAATCAACGGATACTGCTGCTTGTTCCAAACCTGATGAATTTCCAATCCATGCTGCGATGTCTTAAACTGTGGGCAAAA CGGCGAGGAGTGTATGGTAATCTAAATGGGTTTCTGGGAGGAGTGCATTTAGCAGTTCTAGCAGCCTTTGTTTGTCAAAATCAGCCAAACGCCAGTGTAA TTGCTTTAATTTCAAACTTCTTTAGTACATATGCGATGTGGCCTTGGCCTACACCTGTTATGCTGCAAGATGGAATGTCATCAAATGTCGAAGATGTGAT TGAGACTCGATTCTACATGCCTATTCGTTTGCCATGTAGTCCATACGAGTATTGCCATTCCAATGTCACTAAAAGCACATTCACCAAGATCAGAGCAGAG TTTCTCAGAGGGCATTCTATGACTAGGGATCTTCTAAAGTTAAAGCTGGACTCTGATGTGGGGAGAATTTTTGAGCCTTTCCCATACTCAACGAACTATA CACGATTTGTCAAAATCTACCTTTCAGCTCCTGATCAAGATGAGCTAGGAGACTGGGTGGGCTGGGTGAAGTCACACTTCCGCTGTCTACTTCTTAAGCT GGAAGCCGTGCAGGGCTTTTGTGACCCCAACCCCATGGAATATGTTGATATGGATGCATCTGAACCAAATGTTGTTTTCTACTGGGGCCTAAATCGCAGT AGAAGCAATTTCGTGTATATAGAACCTGTTGAGGAGGATTTCTCGAGGAGTATATATTGTGGCTATTATGGCATTCGTGGAAAGATGGAATTATCTATCG TGCAAGCATCTGAACTACCAAAGAATGCTCGGTTTGACAGTGGAAACGGCAAGAAAATGAAAGCATGCTGGAAGATGCTTGACTACAATCAAAGGAGGAC CCCAGCATATTCGCAACATCTGCCAAGCTACTTTGTTGGGTATGTGGAAAGCAATGGAGACACCGAGTACCCAAGTACTGGGGGCTAA
AA sequence Show only first row Show all	>Potri.008G102500.3 pacid=42806674 polypeptide=Potri.008G102500.3.p locus=Potri.008G102500 ID=Potri.008G102500.3.v4.1 annot-version=v4.1 MEDERSLSLLKLMVNEGLFPSPEEDEKRKIIVEKLKTIVVAWAKKVAWQRCLPKQQIAATSATILTYGSYGLGFHDPESDIDALCVGPFFATIAEDFFIV LHNILKSRPEISEIHCVKDSKVPLMRFTFDGISVDLPYAQLKVLNVPENVDILNLSLLTNIDETSWKSLSGVRANQRILLLVPNLMNFQSMLRCLKLWAK RRGVYGNLNGFLGGVHLAVLAAFVCQNQPNASVIALISNFFSTYAMWPWPTPVMLQDGMSSNVEDVIETRFYMPIRLPCSPYEYCHSNVTKSTFTKIRAE FLRGHSMTRDLLKLKLDSDVGRIFEPFPYSTNYTRFVKIYLSAPDQDELGDWVGWVKSHFRCLLLKLEAVQGFCDPNPMEYVDMDASEPNVVFYWGLNRS RSNFVYIEPVEEDFSRSIYCGYYGIRGKMELSIVQASELPKNARFDSGNGKKMKACWKMLDYNQRRTPAYSQHLPSYFVGYVESNGDTEYPSTGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06560		PAPS3	poly(A) polymerase 3 (.1)		Potri.008G102500 [exp]	0	1
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213400 [exp]	1.00	0.9149
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.002G010532 [exp]	3.87	0.8411
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	6.00	0.8505
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	6.16	0.8531
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.005G183800 [exp]	6.32	0.8125
AT3G03560			unknown protein		Potri.013G073400 [exp]	9.16	0.8231
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	11.40	0.8038
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.004G055000 [exp]	18.33	0.7426
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.011G154200 [exp]	18.76	0.7486
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.008G186100 [exp]	19.89	0.6790

Compare expression of checked genes

Potri.008G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.