Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GAL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 793 / 0 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT4G16130 74 / 9e-14 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 54 / 2e-07 Mevalonate/galactokinase family protein (.1) AT3G10700 50 / 3e-06 GalAK galacturonic acid kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148100 [exp] 973 / 0 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 92 / 3e-19 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 78 / 6e-15 AT4G16130 1660 / 0.0 arabinose kinase (.1) Potri.006G070500 [exp] 53 / 3e-07 AT3G10700 555 / 0.0 galacturonic acid kinase (.1) Potri.018G138204 [exp] 43 / 0.0005 AT4G16130 1003 / 0.0 arabinose kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037789 [exp] 823 / 0 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 798 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 791 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 693 / 0 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016320 [exp] 548 / 0 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016321 [exp] 360 / 3e-123 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 73 / 2e-13 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10025946 [exp] 53 / 4e-07 AT3G10700 532 / 0.0 galacturonic acid kinase (.1) Lus10014251 [exp] 52 / 7e-07 AT3G10700 510 / 9e-180 galacturonic acid kinase (.1) Lus10020178 [exp] 46 / 6e-05 AT4G16130 625 / 0.0 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0677 [poplar] [flax] GHMP_C PF08544 [poplar] [flax] GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence Show only first row Show all	>Potri.008G102800.1 pacid=42808190 polypeptide=Potri.008G102800.1.p locus=Potri.008G102800 ID=Potri.008G102800.1.v4.1 annot-version=v4.1 ATGGCGAAGCATGAGGAGACGCCAATCCCATGTTTCTCATCTCTAGAGGCTGTTTACGGAGACGGATCTCAGCTTGAAGAAGCTAAACTCCGTTTTGATC ACTTGAACTCCAAGTTTCTTCAAGTTTTTGGTCACCCTCCTGATGTCTTTGCTCGTTCTCCAGGGAGAGTGAATTTGATTGGAGAGCATATTGATTATGA AGGCTACTCGGTGTTGCCAATGGCAATAAGGCAAGATACTGTTATAGCAATCCGTAAAAATCATGTACAAAAAGTTCTTCGAATCGCAAATGTTAATGAC AAATATACAGAGTGTACTTATCCTGTTGATCCTAATCAGGCAATTGACTTGAAGAATCATAAATGGGGTCATTATTTCATTTGTGGGTATAAGGGTTTTT ATGAATTTGCGAAATCAAAAGGAGTGGATATGGGTGACGCGGTTGGACTTGATGTTATTGTTGATGGAACTGTTCCCACAGGTTCTGGTTTGTCCAGCTC TGCTGCGTTTGTTTGCTCTGCTACCATTGCTATTATGGCTGCTTTTGATGTGAACTTTCCAAAGAAAGAAATTGCCCAGCTAACATGTGAGTGTGAAAGG CACATTGGAACACAATCTGGAGGAATGGACCAGGCAATCTCTGTCATGGCCAAAACTGGATTTGCAGAGCTTATTGATTTCAACCCCATTCGTGCAACTG ACGTGCAACTTCCTGCTGGTGGAACTTTTGTGATTGCACATTCTTTGGCTGAATCTCAGAAGGCAGTCACTGCTGCTACAAATTACAACAACAGAGTAGT TGAATGTCGACTCGCTTCTATCGTACTTGGCATAAAGTTGGGAATGAAACAACAAGATGCAATATCAAACGTCAAAACTCTTTCCGATGTTGAGGGATTG TGTGTATCATTCGCTAATAGTCGTGGCTCTTCTGATCCTGTCATTGCTGTTAAGGAACTTTTGAAAGATAAACCATATACTACTGAAGAAATTGAGGCAA TTACCGGGGAAAGTCTTCAATCAATCTTCAAAAATTCCCCATCTTCTTTGGATGTTCTAAAAGCAGCCAAGCACTTCAAGTTACATCATAGGGCTGCTCA TGTTTATTCTGAAGCCAAGCGAGTCCATGCTTTCAAGGATGCTGTGTCATCAGATTTAAGTGACGAGGACAAGCTAAAGAAGCTCGGTGAGCTTATGAAC GAGAGTCACTACAGCTGCAGCGTTCTATATGAATGCAGCTGCCCCGAGTTGGAAGAACTTGTAAAGATTTGCCGGGATAATGATGCTTTGGGGGCTAGAC TTACAGGAGCTGGATGGGGTGGCTGTGCGGTTGCTTTGGTGAAAGAGGCTACTGTCCCTCAGTTCATCCTCAATTTGAAGGAAAAGTTCTATCAATCAAG AATTGACAAGGGAGTAATCAGCAAGAATGATCTTGGCCTCTATGTTTTTGCTTCAAAGCCTTCAAGTGGTGCTGCTATTTTCAAGTTCTAA
AA sequence Show only first row Show all	>Potri.008G102800.1 pacid=42808190 polypeptide=Potri.008G102800.1.p locus=Potri.008G102800 ID=Potri.008G102800.1.v4.1 annot-version=v4.1 MAKHEETPIPCFSSLEAVYGDGSQLEEAKLRFDHLNSKFLQVFGHPPDVFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTVIAIRKNHVQKVLRIANVND KYTECTYPVDPNQAIDLKNHKWGHYFICGYKGFYEFAKSKGVDMGDAVGLDVIVDGTVPTGSGLSSSAAFVCSATIAIMAAFDVNFPKKEIAQLTCECER HIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLASIVLGIKLGMKQQDAISNVKTLSDVEGL CVSFANSRGSSDPVIAVKELLKDKPYTTEEIEAITGESLQSIFKNSPSSLDVLKAAKHFKLHHRAAHVYSEAKRVHAFKDAVSSDLSDEDKLKKLGELMN ESHYSCSVLYECSCPELEELVKICRDNDALGARLTGAGWGGCAVALVKEATVPQFILNLKEKFYQSRIDKGVISKNDLGLYVFASKPSSGAAIFKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.008G102800 [exp]	0	1	GAL1.2
AT1G11200			Protein of unknown function (D...		Potri.004G035900 [exp]	1.73	0.6533
AT2G35680			Phosphotyrosine protein phosph...		Potri.003G080000 [exp]	28.98	0.5479
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.016G138400 [exp]	29.15	0.5524	Pt-ATPK19.2
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G143900 [exp]	34.79	0.5947
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Potri.016G046350 [exp]	58.32	0.5670
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	75.72	0.5454
AT5G50360			unknown protein		Potri.012G094400 [exp]	100.30	0.5341
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.013G148600 [exp]	109.19	0.5340
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G160500 [exp]	121.73	0.4722
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	137.08	0.4694

Compare expression of checked genes

Potri.008G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.