Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28680 543 / 0 RmlC-like cupins superfamily protein (.1) AT1G07750 542 / 0 RmlC-like cupins superfamily protein (.1) AT1G03890 104 / 8e-25 RmlC-like cupins superfamily protein (.1) AT1G03880 100 / 3e-23 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT5G44120 89 / 3e-19 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT4G28520 69 / 1e-12 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047200 [exp] 630 / 0 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.001G402600 [exp] 311 / 1e-104 AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1) Potri.005G224700 [exp] 116 / 7e-29 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 114 / 5e-28 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 112 / 2e-27 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 112 / 2e-27 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 112 / 2e-27 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 110 / 1e-26 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 101 / 2e-23 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005438 [exp] 563 / 0 AT1G07750 569 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10015219 [exp] 562 / 0 AT1G07750 568 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10040867 [exp] 503 / 3e-180 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005880 [exp] 497 / 9e-178 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10011816 [exp] 114 / 4e-28 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 111 / 6e-27 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 110 / 2e-26 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 106 / 4e-25 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 100 / 4e-23 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 98 / 2e-22 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00190 [poplar] [flax] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Potri.008G102900.1 pacid=42806810 polypeptide=Potri.008G102900.1.p locus=Potri.008G102900 ID=Potri.008G102900.1.v4.1 annot-version=v4.1 ATGGAGGTTGATCTGTCACCAAAATTGTGCAAGAAGGTGTATGGAGGAGATGGTGGGTCTTATTATGCGTGGAGCCCAGCTGAGCTTGCCATGCTAAAAG AAGGGAACATAGGTGCAGCCAAGCTGGCCCTTGAAAAGAATGGTTTTGCTCTTCCTCGTTACTCTGATTCTGCCAAGGTTGCCTATGTTCTTCAAGGGAA TGGGGTAGCTGGTATTGTTCTTCCTGAGAAAGAAGAGAATGTTGTTGCCCTTAAGAAGGGTGATGCTATTGCTCTTCCTTTCGGTGTCGTTACATGGTGG TATAACAAAGAGGACACTGAACTTGTAGTTCTCTTCCTGGGTGACACCTCTACAGCCCACAAAACTGGTGAATTCACCGATTTCTTTTTGACTGGCTCCA ATGGCATTTTCACTGGCTTCTCTTCTGAGTTCGTGAGCCGAGCATGGGATGTGGATGATAAGGCTGTGAAGACCCTAGTTGGAAACCAGACAGCCAAAGG CATTGTCAAGCTTGATGGATCCTTTAAGATGCCTGAACCCAAAAAGGAAAGCCGTGAGGGCTTTGTATACAACTGTGAGGAAGCTCCACTAGATGTTGAT ATTAAGGATGGTGGAAAGGTTGTCCTTTTGAACACCAAGAACCTTCCTTTGGTTGCCGAGGTTGGGCTTGGTGCTGATCTTGTTAGACTGGATGGAAAAG CCATGTGCTCTCCTGGTTTTTCTTGTGACTCTGCTTTACAAGTGACATACATTGTCAGTGGTAGTGGCCGTGTTCAAGTTGTTGGGGTCGATGGCCGCAG GGTCTTGGAAACAACCGTCAAGGCAGGTCATTTGTTCATTGTTCCTAGGTTCTTTGTTGTTTCAAAGATTTGTGATCCAGATGGGATGTCATGGTTCTCC ATCATCACCACTCCCAATCCTATATTCACTCATTTGGCTGGAAGGACTTCTGTGTGGAAGGCTCTATCTCCTCAAGTGCTAGAGGCGTCTCTCAAAGTAT CTCCTGATGATGAGCAGCTTTTCCGCTCCAAGAGAATGAATGAGGAAATTTTCTTCCCACCTCCAAAATGA
AA sequence Show only first row Show all	>Potri.008G102900.1 pacid=42806810 polypeptide=Potri.008G102900.1.p locus=Potri.008G102900 ID=Potri.008G102900.1.v4.1 annot-version=v4.1 MEVDLSPKLCKKVYGGDGGSYYAWSPAELAMLKEGNIGAAKLALEKNGFALPRYSDSAKVAYVLQGNGVAGIVLPEKEENVVALKKGDAIALPFGVVTWW YNKEDTELVVLFLGDTSTAHKTGEFTDFFLTGSNGIFTGFSSEFVSRAWDVDDKAVKTLVGNQTAKGIVKLDGSFKMPEPKKESREGFVYNCEEAPLDVD IKDGGKVVLLNTKNLPLVAEVGLGADLVRLDGKAMCSPGFSCDSALQVTYIVSGSGRVQVVGVDGRRVLETTVKAGHLFIVPRFFVVSKICDPDGMSWFS IITTPNPIFTHLAGRTSVWKALSPQVLEASLKVSPDDEQLFRSKRMNEEIFFPPPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28680			RmlC-like cupins superfamily p...		Potri.008G102900 [exp]	0	1
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	7.14	0.8486
					Potri.002G193400 [exp]	11.31	0.8298
AT5G44670			Domain of unknown function (DU...		Potri.003G156600 [exp]	11.57	0.8383
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	13.63	0.8322
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G194900 [exp]	14.31	0.8206
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	25.78	0.8111
AT5G42690			Protein of unknown function, D...		Potri.014G034800 [exp]	26.83	0.7916
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.014G004500 [exp]	27.12	0.8099
AT1G76270			O-fucosyltransferase family pr...		Potri.004G183200 [exp]	27.34	0.7356
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.001G032800 [exp]	30.74	0.6925

Compare expression of checked genes

Potri.008G102900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.