Plant FIBer expression Database

Potri.008G103000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21800 526 / 0 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
AT4G12790 90 / 2e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
AT5G22370 75 / 9e-15 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G148000
[exp]
667 / 0 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.014G015700
[exp]
87 / 4e-19 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.014G174200
[exp]
87 / 4e-19 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019602
[exp]
560 / 0 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10040022
[exp]
545 / 0 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10036411
[exp]
89 / 7e-19 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Lus10041086
[exp]
84 / 7e-18 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Lus10007747
[exp]
80 / 8e-17 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10018675
[exp]
80 / 2e-16 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF03029 ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence
>Potri.008G103000.3 pacid=42806531 polypeptide=Potri.008G103000.3.p locus=Potri.008G103000 ID=Potri.008G103000.3.v4.1 annot-version=v4.1
ATGGATATTGATTCTAAGCTCAACAAATTGGATATCAACTCTGGGGATGAAGCCTCATCATCAACACAAGTGCAAGTGGATTCTAAGGGAACTGCTGAAG
ACAAGGATGAATTAGCTGACTCAATGAATAACTTGAATGTGGAAGCATCCTCATCTGGGCAGGTGGGACCTACATTCAAAAGAAAACCGGTTATCATCAT
TGTTGTTGGAATGGCAGGTAGTGGAAAAACAACTTTTCTTCATAGGTTGGTTTGCCACACACAAGCTTCAAGGATTCGTGGTTATGTGCTCAACCTTGAC
CCTGCTGTGATGACTCTCCCCTATGGTGCAAATATTGATATAAGGGACACTGTTAAGTACAAGGAAGTGATGAAGCAGTTTAATCTTGGACCTAACGGTG
GAATCCTGACTTCTCTTAACTTGTTTGCAACAAAGTTTGATGAGGTCATTCAAGTCATTGAGAAGCGAGCAGATCAGCTTGATTATGTTCTTGTGGATAC
ACCTGGTCAAATTGAGATTTTCACTTGGTCTGCTTCTGGAGCTATCATTACCGAAGCTTTTGCTTCAACCTTTCCAACTGTGGTTGCTTATGTAGTTGAC
ACACCTCGTTCCTCAAGCCCAGTAACTTTCATGAGCAATATGCTTTACGCTTGCAGCATCCTCTATAAGACGCGGTTGCCTCTTGTGTTGGTATTCAACA
AAACTGATGTGGCTCAACACCAATTTGCTATAGAGTGGATGGAAGATTTTGAAGCCTTTCAAGGAGCAATGAGGTCAGATGATTCATACATGTCTACTTT
TTCTCAAAGCCTCTCCCTAGTGCTAGATGAATTCTATAAAAATTTGAGATCAGTTGGGGTCTCTGCTGTTTCTGGAGCTGGAATGGATGCCTTCTTCAAG
GCCATTGAAGCCAGTGCTGAGGAGTATATGGAAACTTACAAGGCTGATCTTGATAAGAGACGGGTAGAGAAGCAACGTTTGGAGGAAGAGCAGCAAAAAC
AGAACATGGAAAAGCTGAGGAAGGACATGGAAAATTCAGGGGGACAATCTGTTGTTTTGAGCACTGGTTTAAAGGATAAAGCCCGTCATAATAACATGGT
CGATGAGGAAGATGAGGAGGATGAGGAGGACATTGAAGATGATGATTCTGAGGTGTTTACTGAAGAAGATGTTATAGATGAGGATGAAGATGAAGATGAA
GAGGTGGCCAGGTTCTCTTTCTAG
AA sequence
>Potri.008G103000.3 pacid=42806531 polypeptide=Potri.008G103000.3.p locus=Potri.008G103000 ID=Potri.008G103000.3.v4.1 annot-version=v4.1
MDIDSKLNKLDINSGDEASSSTQVQVDSKGTAEDKDELADSMNNLNVEASSSGQVGPTFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRIRGYVLNLD
PAVMTLPYGANIDIRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVIQVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVD
TPRSSSPVTFMSNMLYACSILYKTRLPLVLVFNKTDVAQHQFAIEWMEDFEAFQGAMRSDDSYMSTFSQSLSLVLDEFYKNLRSVGVSAVSGAGMDAFFK
AIEASAEEYMETYKADLDKRRVEKQRLEEEQQKQNMEKLRKDMENSGGQSVVLSTGLKDKARHNNMVDEEDEEDEEDIEDDDSEVFTEEDVIDEDEDEDE
EVARFSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21800 QQT2 quatre-quart2, P-loop containi... Potri.008G103000
[exp]
0 1
AT5G09390 CD2-binding protein-related (.... Potri.003G023700
[exp]
1.73 0.8586
AT3G02065 P-loop containing nucleoside t... Potri.014G140100
[exp]
2.64 0.8613
AT1G44820 Peptidase M20/M25/M40 family p... Potri.002G085400
[exp]
2.82 0.8590
Potri.007G125700
[exp]
3.16 0.8437
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Potri.016G082900
[exp]
5.29 0.8404
AT1G51580 RNA-binding KH domain-containi... Potri.010G251700
[exp]
7.74 0.8036
AT3G09770 LOG2 LOSS OF GDU 2, RING/U-box supe... Potri.016G089000
[exp]
10.39 0.8412
AT5G08550 ILP1 increased level of polyploidy1... Potri.008G002600
[exp]
12.96 0.8473
AT4G12760 unknown protein Potri.014G197700
[exp]
13.26 0.8341
AT5G66360 DIM1B adenosine dimethyl transferase... Potri.018G018900
[exp]
13.41 0.8267

Potri.008G103000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.